[Bioc-devel] Problem with EnMCB

2020-11-12 Thread xin wwa
Dear When the platform built our package EnMCB, we got an error only on windows as following: ERROR: dependencies 'minfi', 'IlluminaHumanMethylation450kanno.ilmn12.hg19' are not available for package 'EnMCB' Those dependencies were removed from 3.13 on windows? Xin Yu Ph.D. student of Biomedical

Re: [Bioc-devel] Issue when merging upstream current release branch

2020-11-12 Thread Kern, Lori
* I have to push only to origin/master and upstream/master for the reviewers suggestions (since they are only suggestions, not bugs to fix), new features or improvements. And wait for the next Bioc release. * I have to push to origin/release_x_y and upstream/release_x_y only if there are

Re: [Bioc-devel] Issue when merging upstream current release branch

2020-11-12 Thread Hélène Borges
Yes, I have exactly the output you suggest for the command git remote -v. Also, it worked making the command you suggested (git push origin RELEASE_3_12). To make things about versioning clear to me: - I have to push only to *origin/master* and *upstream/master *for the reviewers suggestions

Re: [Bioc-devel] Issue when merging upstream current release branch

2020-11-12 Thread Kern, Lori
To recap: It seem like you have created the RELEASE_3_12 branch that will track from upstream (Bioconductor's RELEASE_3_12 branch) as the following you said worked: git checkout -b RELEASE_3_12 upstream/RELEASE_3_12 So the following fails: git merge origin/RELEASE_3_12 merge: origin/RELEASE_3_

[Bioc-devel] Issue when merging upstream current release branch

2020-11-12 Thread Hélène Borges
Dear Bioc developers, I am the maintainer of the wpm package which has been released for the first time on Bioconductor release 3.12. After reviewers comments for the corresponding paper, I need to make some changes on my package, including adding a test dataset. Since I changed my machine, I foll