Re: [Bioc-devel] Co-maintainer for SpectralTAD and TADCompare

2020-10-24 Thread Mikhail Dozmorov
Thank you, Nitesh. Currently, SpectralTAD and TADCompare packages are failing to build due to PRIMME package, the main dependence, has been removed from CRAN. The developers seem to address it, https://github.com/primme/primme/issues/38, but it may take a while for it to reappear. We are looking fo

Re: [Bioc-devel] nightly devel build

2020-10-24 Thread Martin Morgan
Yes, if git remote -v lists something like famat master$ git remote -v upstream g...@git.bioconductor.org:packages/famat (fetch) upstream g...@git.bioconductor.org:packages/famat (push) then `git push upstream master` will push the changes on your current local branch to the

[Bioc-devel] nightly devel build

2020-10-24 Thread Emilie
Hello, My package (famat) had an error while being tested in the nightly devel build. I fixed the issue, but i have a naive question : do i just have to push changes using "git push upstream master" like before? And will the build be launched again after that? Thank you for your answer Emilie

Re: [Bioc-devel] NanoporeRNASeq not found in the devel Bioc3.12 package list

2020-10-24 Thread Martin Morgan
I believe that NanoporeNSeq was added to the experiment data build 'manifest' after the most recent build (on Mondays and Thursdays) started, so it will not be available until Monday experiment data package builds are complete, and bambu has been built with those packages available -- I think th