Re: [Bioc-devel] Reset BioCredentials

2020-10-08 Thread Lei Huang
Dear Nitesh, Thanks for the help! I was able to update my email address for package methyAnalysis and lumi. However, I don't have access to the repo for the 3rd package GeneAnswers. Could you please help me on that? Thanks, Lei On Tue, Sep 29, 2020 at 7:39 AM Turaga, Nitesh < nitesh.tur...@rosw

[Bioc-devel] Remove Windows support for a package

2020-10-08 Thread Lei Huang
Hi, A package I maintain cannot be built on Windows server because a dependency 'bigmemoryExtras' is no longer supported on Windows (please see the error message below). ERROR: dependency 'bigmemoryExtras' is not available for package 'methyAnalysis'* removing 'C:/Users/biocbuild/bbs-3.12-bioc/m

Re: [Bioc-devel] Unsure about why package is not updating

2020-10-08 Thread Marcel Ramos
Hi Krutik, Version numbers are not considered a decimal values. Therefore 5 < 4158. See here for further details: https://cran.r-project.org/doc/manuals/R-exts.html#The-DESCRIPTION-file Bump the version to 0.99.4159 and try again. Best, Marcel On 10/8/20 4:09 PM, Krutik Patel (PGR) wrote:

[Bioc-devel] Unsure about why package is not updating

2020-10-08 Thread Krutik Patel (PGR)
Dear Bioconductor, Thank you for all the help so far. Unfortunately, I have a few more issues. I updated the version of my package to 0.99.5, found here http://www.bioconductor.org/checkResults/3.12/bioc-LATEST/TimiRGeN/, but the new version is not being built, regardless of check successes or

[Bioc-devel] Fwd: 'reactome.db' Bioconductor package

2020-10-08 Thread Willem Ligtenberg via Bioc-devel
Hi, Since I haven't heard back from Kayla, also forwarding to bioc-devel. Kind regards, Willem Forwarded Message From: Willem Ligtenberg To: "Interdonato, Kayla" Subject: 'reactome.db' Bioconductor package Date: Mon, 05 Oct 2020 20:46:37 +0200 > Hi, > > I noticed that I fo

Re: [Bioc-devel] Single Package Builder for New Package Submission

2020-10-08 Thread Kern, Lori
We believe this issue has now been resolved. Thank you for your patience. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-dev

[Bioc-devel] Single Package Builder for New Package Submission

2020-10-08 Thread Kern, Lori
We are encountering ERRORs with the Single Package Builder used for new package submission. Currently, build reports are not being produced on git push. We are aware of the issue and are working to have it resolved as soon as possible. We apologize for any inconvenience and will kick off manu