Re: [Bioc-devel] Best object structure for representing a pairwise genome alignment ?

2020-09-21 Thread Pages, Herve
Hi Charles, Vince, Yes, a PairwiseAlignments object will contain the sequences of the 2 genomes being aligned so will be big. Could be mitigated by using one object per chromosome instead of trying to represent the full genome alignment in a single object, but then you loose the ability to rep

Re: [Bioc-devel] "length(url) == 1 is not TRUE" error for vignette only on build system

2020-09-21 Thread Shraddha Pai
Hi all, I've updated the cache calls in netDx per Martin's suggestion above: > bfc <- BiocFileCache() > path <- bfcrpath(bfc, url) The package now builds on netbbiolo but times out on malbec1 and tokay1, and has an error on merida1. I've never had a package timeout before. Is this because of the u

Re: [Bioc-devel] Update R package I developed which has been released by bioconductor

2020-09-21 Thread Shepherd, Lori
Bioconductor would not have your package on github. Bioconductor has your repository in a git server. If you already have a clone of your github repository you could follow the instructions here to add the remote to the Bioconductor repository you referenced here: http://bioconductor.org/deve

[Bioc-devel] Update R package I developed which has been released by bioconductor

2020-09-21 Thread Xiaowen Chen
Hi, I submit R package called epihet on 2018. It has been accepted and released on Bioconductor. Recently, we received the reviewers’ comments about the corresponding paper for epihet, and the reviewer need us to add more parameters for some function in epihet, Could you tell me what I should do