Hi, Jennifer.
It looks to me like your vignette includes a PDF in the output. You might
want to double-check that you are using a png format for the figure.
Sean
On Thu, Aug 6, 2020 at 1:28 PM Yuxi Sun wrote:
> To whom it may concern,
>
> We updated our BioTIP package vignette. However, figur
To whom it may concern,
We updated our BioTIP package vignette. However, figure 1 in our vignette
does not show up on the webpage if opened with Google Chrome but does not
show if opened with Safari. Is this a problem? How could we go about fixing
it?
Best,
Jennifer
[[alternative HTML ve
Hi Robert,
Yes seqlevelsStyle's new behavior is slightly different and less
forgiving. The thing is that it will generally reveal dormant issues
which is not such a bad thing after all.
Note that it doesn't seem completely straightforward to retrieve the
reference genome/assembly directly fr
My view of shiny applications is that they should provide a graphical interface
to sequences of commands that can be run at the command line. As such, the
commands themselves should be part of a standard R package, with appropriate
examples, tests, and documentation, including a vignette illustr
hi Hervé,
thank you very much for your clarifications, but this behavior is
different in release and has been different until now, this is BioC 3.11:
library(VariantAnnotation)
fl <- system.file("extdata", "chr22.vcf.gz", package="VariantAnnotation")
vcf <- readVcf(fl, "hg19")
seqlevels(vcf)
Hi,
If you are using roxygen, you can include a \donttest{} block. But this will
still produce the error if it’s less than 80%.
Once you submit your package for review, your reviewer can give you a better
idea of how to resolve this issue. But most likely it needs some sort of
example.
Take
Hi all,
I have recently developed a shinyApp useful for DNA methylation analysis. I
would like to upload it to Bioconductor.
I have executed BiocCheck and I have an error that I don't know how to
resolve. "At least 80% of man pages documenting exported objects must have
runnable examples."
My pa
