Re: [Bioc-devel] Unable to reproduce OS/X build error for "netDx" package

2020-06-26 Thread Mike Smith
Hi Shraddha, I don't know what Java the build system uses, but I can reproduce the error with Java 13. It's fine with Java 8 as you say. I wont copy the whole error message as it's the same as I see on the build system, but I do notice that in the middle I see: Java 8 detected This seems wrong

Re: [Bioc-devel] Deprecated a contained class

2020-06-26 Thread Hervé Pagès
Hi Martin, Don't know how/where to implement a deprecation message that wouldn't be confusing for the end users. FWIW if the replacement of class Original with class New is just a renaming (everything else remains the same), a situation I've dealt with a lot in the S4Vectors/IRanges/GenomicR

[Bioc-devel] Deprecated a contained class

2020-06-26 Thread Martin Morgan
Pkg A provides a (virtual) class "Original". Pkg B creates a derived class setClass("Derived", contains = "Original") Pkg A would like to deprecate "Original" and replace with "New". Any ideas on how to implement a deprecation message so that the Pkg B maintainer knows that their use of class O