Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)

2020-03-27 Thread Turaga, Nitesh
You should try and set up your system using SSH from your Github account as well. > On Mar 27, 2020, at 12:25 PM, Enio Gjerga wrote: > > Hi, > > Ahh apparently I cannot. I tried to clone a random repo (PHONEMeS) locally > through the command you provided, and then got the following: > > Clon

[Bioc-devel] Fwd: Trying to access the source repository of a bioconductor package (Developer Access)

2020-03-27 Thread Turaga, Nitesh
Seems the mailing list got dropped off. Forwarding to make sure the community is in the know. Begin forwarded message: From: Enio Gjerga mailto:enio.gje...@gmail.com>> Subject: Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access) Date: March 27, 2

Re: [Bioc-devel] Question regarding the error from build report

2020-03-27 Thread Michael Lawrence via Bioc-devel
Try resending the email as plain text. The list strips HTML content, so if the message has no text part, there will be no message. On Thu, Mar 26, 2020 at 9:35 PM Hervé Pagès wrote: > > What is the question? > > On 3/26/20 17:36, 유도영 wrote: > > > > ___

Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)

2020-03-27 Thread Turaga, Nitesh
Ok, can you also show my the result of ssh - T g...@git.bioconductor.org | grep CNORfeeder > On Mar 27, 2020, at 11:54 AM, Enio Gjerga wrote: > > Hi, > > Thank you for your reply. So according to #14: > > 1. I use "git remote -v" and then I get the following: > > originhttps

Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)

2020-03-27 Thread Enio Gjerga
Hi, Thank you for your reply. So according to #14: 1. I use "git remote -v" and then I get the following: origin https://github.com/saezlab/CNOv2.git (fetch) origin https://github.com/saezlab/CNOv2.git (push) upstream g...@git.bioconductor.org:packages/CNORfeeder.git (fetch) upstream g...@git

Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)

2020-03-27 Thread Turaga, Nitesh
As given in #14 of the FAQ, please send me git remote -v > On Mar 27, 2020, at 10:54 AM, Enio Gjerga wrote: > > Hello, > > Thank you very much for your reply. I have added a new key on my > BiocCredentials and on Github, however, I am afraid that the same issue still > persists. I

Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)

2020-03-27 Thread Enio Gjerga
Hello, Thank you very much for your reply. I have added a new key on my BiocCredentials and on Github, however, I am afraid that the same issue still persists. If I try to check whether I have access to the package (using the "ssh -T g...@git.bioconductor.org" command) or clone it locally (through

[Bioc-devel] Bioconductor 3.11 db0s are available

2020-03-27 Thread Interdonato, Kayla
Hello Bioconductor Community! The newest db0s for the upcoming Bioconductor 3.11 release are up and available for download in the devel version of Bioconductor. They are: anopheles.db0_3.11.0.tar.gz arabidopsis.db0_3.11.0.tar.gz bovine.db0_3.11.0.tar.gz canine.db0_3.11.0.tar.gz chicken.db0_3

Re: [Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)

2020-03-27 Thread Turaga, Nitesh
Try adding another key. If that doesn't work, show us your git set up. http://bioconductor.org/developers/how-to/git/faq/ #13 and #14 Best, Nitesh On 3/27/20, 6:15 AM, "Bioc-devel on behalf of Enio Gjerga" wrote: Hello, I am Enio Gjerga and I am the maintainer of the CNORfee

[Bioc-devel] Trying to access the source repository of a bioconductor package (Developer Access)

2020-03-27 Thread Enio Gjerga
Hello, I am Enio Gjerga and I am the maintainer of the CNORfeeder and the CNORode package, a role which I got recently. I am facing trouble trying to access the source packages for then later syncing it with a Github repository and do a few necessary updates. I try first to obtain developer access

Re: [Bioc-devel] Drosophila virilis BioPackage forthcoming?

2020-03-27 Thread Hervé Pagès
Hi Ilkka, On 3/26/20 02:11, Ilkka Havukkala wrote: Hello there Is it possible to get Drosophila virilis genome as a BSGenome data package? e.g. this one https://metazoa.ensembl.org/Drosophila_virilis/Info/Annotation/ I wrapped up this genome in the BSgenome.Dvirilis.Ensembl.dvircaf1 package.