Hi,
the source package on 3.11/bioc/html/atSNP.html
will only be updated with a new one if all checks succeed.
This prevents that you download a broken package.
Nowadays one would call that a continuous integration pipeline,
but the BioC team already does that since, um, more than a decade ;-)
Hello Steffen,
Thank you for the response. You are right, and I also recognized it. However, I
don’t see the updates from the source package I downloaded from the package
webpage at http://bioconductor.org/packages/3.11/bioc/html/atSNP.html. I
updated both DESCRIPTION and graphic.R, but neither
Hi,
please have a look at the build report first:
http://bioconductor.org/checkResults/devel/bioc-LATEST/atSNP/
where your commit 2020-02-12 has been picked up.
The check has an ERROR, most likely in the examples
to plotMotifMatch().
Also, I guess the version 1.3.0 was the version number
bum
Dear all,
I used "git push upstream master” to commit changes for atSNP package to
Bioconductor 4 days ago. But, Bioconductor does not take the updated version,
but sticks with the old version of the package, which I committed in October.
Does someone have an idea about how to fix it? Thanks.
That would be correct.
On 2/16/20 6:38 AM, Kasper Daniel Hansen wrote:
It sounds to me that the class definition / structure is updated. You
should also have an associated updateObject() method to deal with this;
that's tradition. Of course, you may already have addressed this and
just not wri
It sounds to me that the class definition / structure is updated. You
should also have an associated updateObject() method to deal with this;
that's tradition. Of course, you may already have addressed this and just
not written about it in your email.
On Sun, Feb 16, 2020 at 3:51 AM Aaron Lun <
in
Dear list,
As of version 1.9.2, the SingleCellExperiment class structure has been
updated so that "sizeFactors()<-" will store values in a "sizeFactor"
field in the "colData()", rather than the internal metadata. This aims
to improve interoperability of the SCE size factors with functions that
