Re: [Bioc-devel] How to use RData files in Bioconductor data and software packages

2020-01-14 Thread Kasper Daniel Hansen
Tobias, When you use the data() command on the data package, you need to do library(dummyData) first (and you therefore need to Suggest: dummyData) Here is an example from minfi/minfiData if (require(minfiData)) { dat <- preprocessIllumina(RGsetEx, bg.correct=FALSE, normalize="controls") }

Re: [Bioc-devel] Question about github repo

2020-01-14 Thread Andris Jankevics
Hi Krutik, You are looking at the "problem" from a wrong angle. If there are no any reasons raised by your PhD funding body to keep your repository closed, it's of your own benefit to have all the code public: a) There is chance that someone else in the world is working on something very sim

[Bioc-devel] Question about github repo

2020-01-14 Thread Krutik Patel (PGR)
Hi Bioconductor dev team, I am ready to submit my first package to bioconductor. It is currently on a private github and I wish to start the process of submission. Do I need to make my github repo public prior to sending it to the bioconductor contributions github repo. I understand that the co