Hello Lori,
Done !
I removed the two references to c++11 from the package, ran a BUILD and a
CHECK and they were clean.
Pushed the changes.
Below, the log of the push.
Let me know what you find in the BiocCheck space pertaining the Sweave
error.
Thank you !
Best regards,
George Weingart PhD
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Thanks Lori!
Will do.
Let me know about BiocCheck.
Thanks!
George Weingart
On Mon, Jul 15, 2019 at 10:26 AM Shepherd, Lori <
lori.sheph...@roswellpark.org> wrote:
> I can look into the BiocCheck ERROR for future development. It would be
> good to figure out why this is happening. But in the m
I can look into the BiocCheck ERROR for future development. It would be good to
figure out why this is happening. But in the meantime, if your solution
passes R CMD build and R CMD check please continue with pushing to the
git.bioconductor.org server as BiocCheck is not run on the nightly bui
Hello Lori and Vincent,
I am looking at the Bioconductor problem building banocc.
Can I trouble you to look into that?
If you cannot figure it out, can you advise me what would be the correct
forum / helpdesk to request assistance to resolve the issue?
I am posting the following logs:
1.
Dear sir or madam,
I am the maintainer of the depmap package. I would would like this email,
theodore.kill...@uclouvain.be added to the Bioconductor server so I can further
maintain this package.
Warm regards,
Theo Killian
[[alternative HTML version deleted]]
_
Sure, thanks.
I will double check the entire process again and update you if the problem
persists.
Many thanks.
Hamed.
On Mon, 15 Jul 2019, 15:45 Shepherd, Lori,
wrote:
> Please direct further questions to the bioc-devel@r-project.org mailing
> list/ use "reply all" so it remains in the thread
Please direct further questions to the bioc-devel@r-project.org mailing list/
use "reply all" so it remains in the thread
The Bioconductor git repository has been updated and I'm unsure what you mean
that you do not see the changes when using the R command.
When I BiocManager::install("Ph
also remember that you are making changes to the _devel_ version of
Bioconductor, so must look for changes in the devel branch of the repository;
http://bioconductor.org/developers/how-to/useDevel/
Martin
On 7/15/19, 9:28 AM, "Bioc-devel on behalf of Shepherd, Lori"
wrote:
We will n
We will need more information in order to help you properly.
Could you please inform us of the package that you are referring to?
When you push make sure you are pushing to the git.bioconductor.org. This
involves your remotes to be properly set up and that you are pushing to the
right locatio
Dear All,
I have always problems with updating the R package on Bioconductor and
installing the updated version of the package fro the repository.
The workflow that I follow is like:
1. Make changes into the source code
2. Increase the subversion x.y.z to x.y.(z+1)
3. Push the changes t
My seesionInfo:
> sessionInfo()
R Under development (unstable) (2019-07-11 r76823)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.5
And
> BiocManager::install("stringdist")
Bioconductor version 3.10 (BiocManager 1.30.4), R Under development (unstable)
(2019-07-11 r
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