Re: [Bioc-devel] Problems with MACPET package

2019-07-08 Thread Martin Morgan
Under bioc-devel, I ran MACPET/vignettes$ R CMD Stangle MACPET.Rmd and then in R source("MACPET.R", echo = TRUE) where the problem manifests as > summary(MACPET_pintraData,heatmap=TRUE) Error in .Vector_summary(object, ...) : unused argument (heatmap = TRUE) You have the S4 class > g

[Bioc-devel] Problems with MACPET package

2019-07-08 Thread Ioannis Vardaxis
Hey, My package (MACPET) has been crashing lately. The error I get is from the vignette: Error in .Vector_summary(object, ...) : unused argument (heatmap = TRUE) Calls: ... withCallingHandlers -> withVisible -> eval -> eval -> summary -> summary Execution halted When I call the summary funct