[Bioc-devel] new error with saved HDF5SummarizedExperiment

Loading required namespace: HDF5Array Error in .stop_if_bad_dir(dir, prefix) : directory "/home/biocbuild/bbs-3.10-bioc/R/library/BiocSklearn/hdf5/tenx_750" does not seem to contain an HDF5-based SummarizedExperiment object previously saved with saveHDF5SummarizedExperiment() Calls: -> .stop

[Bioc-devel] error regarding splitAsList from IRanges packages

Hi I have a build error for RNAmodR package, which was just added to the Bioc git repo and was build for the first time for 3.10. https://bioconductor.org/checkResults/3.10/bioc-LATEST > No methods found in package �IRanges� for request: �splitAsList� when loading > �ensembldb� > Error: object

Re: [Bioc-devel] BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun

Sorry we didn't spot this sooner. Yesterday's report indeed did not post. Today's report is up and has a valid snapshot date of Thur. http://bioconductor.org/checkResults/3.10/bioc-LATEST/ We apologize for the inconvenience. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Can

Re: [Bioc-devel] verification on configuration

The instructions on https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ will not necessarily update the git.bioconductor.org version of the package. Please also see https://bioconductor.org/developers/how-to/git/push-to-github-bioc/ If the remotes are set up as follows (you

[Bioc-devel] verification on configuration

Hi, I am coming back to my package ChIPSeqSpike after a long break. I have followed the instructions here: https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ I have imported my project in eclipse and did a push after modifying the NEWS file. Will this be visible on the dev page

[Bioc-devel] List of Deprecated Packages Bioc 3.10

The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly. The packages condcomp, PathNet and allenpvc have been added to the list. The current list of dep

[Bioc-devel] BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun

Dear Bioconductor team, I noticed that the "snapshot data" for the BioC 3.10 build is stacked on Tuesday: 2019-06-04 17:01:41 -0400 (Tue, 04 Jun 2019) https://bioconductor.org/checkResults/3.10/bioc-LATEST/ Kind regards, Carmen -- Carmen Maria Livi Post Doctoral Researcher Ferrari Lab IFOM - F