Re: [Bioc-devel] R CMD check WARNING file link 'x' in package 'y' does not exist and so has been treated as a topic

Dear Benjamin, Thanks for the pointers! I adopted your solution and it now passes the check on tokay2 as well! Thanks! All the best Leif On 2019-04-26, 15:51, "Benjamin Tremblay" wrote: Hi, I’ve actually had the exact same problem. The solution for me was to change \link[pkg:f

[Bioc-devel] minfi::makeGenomicRatioSetFromMatrix() Windows mem alloc error

Hi Bioc, There seems to be a Windows-specific memory allocation error when running makeGenomicRatioSetFromMatrix() from within DMRcate::DMR.plot() calling the IlluminaHumanMethylationEPICanno.ilm10b4.hg19 annotation . You can find the offending error in the most recent build here: http://bioco

Re: [Bioc-devel] Mc OSX fail [MSData::Spectrum::getMZIntensityPairs()] Sizes do not match

Hi Tom! > On 28 Apr 2019, at 18:04, Thomas Lawson wrote: > > Hi BioConductor community, > > My package (msPurity) is passing the build on the Linux and Windows servers > but has just started failing on the Mac OS X server due to the following > error when running the "purityX" constructor in th

Re: [Bioc-devel] Error: invalid graphics state in creating vignettes

Hello Jianhong, Thank you very much for the quick response. I dropped all par commands, and used layout() instead of par(mfrow=c(4,1)). But, I still get the same error message. I put the updated code below. Do you have some suggestions on debugging? * creating vignettes ... ERROR --- re-buildi

[Bioc-devel] Mc OSX fail [MSData::Spectrum::getMZIntensityPairs()] Sizes do not match

Hi BioConductor community, My package (msPurity) is passing the build on the Linux and Windows servers but has just started failing on the Mac OS X server due to the following error when running the "purityX" constructor in the vignette : > Error: processing vignette 'msPurity-vignette.Rmd' faile