[Bioc-devel] TIMEOUT and tokay2 require Rmpi

2019-04-14 Thread 郝洁
Hi, Our package SINCE has got TIMEOUT notice several times, but it only took a few seconds on my local Mac system. And it also states require Rmpi for Windows but not for Mac or Linux, how should I fix this? Thanks Jie ___ Bioc-devel@r-project.org m

Re: [Bioc-devel] Pushing towards a better home for matrix generics

2019-04-14 Thread Pages, Herve
I installed R 3.6 beta and can confirm that the clashes between the row/colSums and row/colMeans generics from Matrix and BiocGenerics are gone. Excellent! Thanks Michael. H. On 4/9/19 11:15, Michael Lawrence wrote: This should be in trunk and the 3.6 release branch. On Thu, Mar 28, 2019 at 9:

Re: [Bioc-devel] Help with installing netReg

2019-04-14 Thread Vincent Carey
On Sun, Apr 14, 2019 at 6:30 PM Spencer Brackett < spbracket...@saintjosephhs.com> wrote: > Good evening, > > I am having problems with downloading the package used to generate > regression models on R. The following is the error message I received. I > tried installing BiocManager instead as sug

[Bioc-devel] Help with installing netReg

2019-04-14 Thread Spencer Brackett
Good evening, I am having problems with downloading the package used to generate regression models on R. The following is the error message I received. I tried installing BiocManager instead as suggested, but this too did not work. Any ideas? The downloaded binary packages are in C:\Users\Spence

Re: [Bioc-devel] GAlignments Constructor Type Checking Error

2019-04-14 Thread Martin Morgan
Your strand factor only has level "+", but should have levels "+", "-", "*". Use GenomicRanges::strand() to construct the right thing. Martin On 4/14/19, 3:01 AM, "Bioc-devel on behalf of Dario Strbenac" wrote: Good day, Although the documentation states "Generally not used dir