Re: [Bioc-devel] Error in Bioc windows check report

2019-01-01 Thread Martin Morgan
The warnings below can be understood by a careful reading of https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Cross_002dreferences You use \link[pkg]{foo} and the docs say that foo is the name of the html file where you would like to link. DNAStringSet is documented in the html file

Re: [Bioc-devel] how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed)

2019-01-01 Thread Lulu Chen
Hi Martin, Thanks for your help. But setting different number of workers will generate different results: > unlist(bplapply(1:4, rnorm, BPPARAM=SnowParam(1, RNGseed=123))) [1] 1.0654274 -1.2421454 1.0523311 -0.7744536 1.3081934 -1.5305223 1.1525356 0.9287607 -0.4355877 1.5055436 > unlist(bp