Re: [Bioc-devel] SummarizedExperiment warning upon loading

2018-12-03 Thread Martin Morgan
Please try re-installing BiocGenerics. It might also be necessary to reinstall other packages in 'XVector', 'S4Vectors', 'IRanges', "GenomicRanges' I believe the problem is that the 'lengths' generic was implemented in base R and then removed from BiocGenerics, but that one or more of your insta

Re: [Bioc-devel] SummarizedExperiment warning upon loading

2018-12-03 Thread Lan Huong Nguyen
Thank you for the advice! I checked validity of the packages and reinstalled "too new" once appearing in the warning. However, I could not install a correct BiocParallel version using if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Bi