Thank you! I was able to activate my account and clone my repository.
Best wishes,
Norman
On Thu, Nov 15, 2018 at 1:21 AM Turaga, Nitesh
wrote:
>
> Please try to activate your account now. I have updated your email address on
> our end.
>
> You will need to add SSH keys to your account once it i
The only reliable way to implement cbind() is through cbind2(). Perhaps we
should drop cbind,DataFrame. The only downside would be poorer performance
due to additional dispatch.
We could try to more fully define dots dispatch, but how should it behave
in this case? Intuitively, I would expect all
I submitted a question to the support site, but thought it might be useful
to post here as well. My apologies for the cross-posting.
-- Forwarded message -
From: Lance Parsons [bioc]
Date: Wed, Nov 14, 2018 at 2:39 PM
Subject: [bioc] DEXSeqHTML getListElement GRanges error
To:
Yes, I will make sure my cbind() implementation coerces to the correct subclass.
That could solve my error as well, but the warnings about S4 dispatch on “...”
are still a problem.
-Kylie
On Nov 14, 2018, at 12:38 PM, Michael Lawrence
mailto:lawrence.mich...@gene.com>> wrote:
The use of c() i
The use of c() in the implementation of [[<- is problematic, since [[<- has
the semantic of insertion, preserving the overall structure of x, while c()
is a combination of two or more peer data structures, and it is difficult
to define the correct logic through dispatch.
The dispatch on ... is not
Please try to activate your account now. I have updated your email address on
our end.
You will need to add SSH keys to your account once it is activated.
Your ID is n.pavelka
Best,
Nitesh
> On Nov 14, 2018, at 3:46 AM, Norman Pavelka wrote:
>
> normanpave...@gmail.com
This email mes
Hello all,
We will be working on converting the Single Package builder over to R 3.6 Bioc
3.9.
During this time you may experience service downtime for the issue tracker and
automatic builds during the submission review process. We hope the
inconvenience will be minimal and thank you for you
I meant AWS S3 access - sorry - I will be sending credentials in a separate
email for that
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From:
Agreed the file should be in annotationhub. I can give you S4 access to upload
the file. I will need a metadata.csv file created for the file as described in
https://bioconductor.org/packages/release/bioc/vignettes/AnnotationHub/inst/doc/CreateAnAnnotationPackage.html
This is an interesting
Hi Michael,
Here is a simple example of what I’m trying to do:
setClass("IndexedDataFrame",
contains="DataFrame",
slots=c(ids="numeric"))
# track additional ID metadata w/ special rules
IndexedDataFrame <- function(ids, ...) {
x <- DataFrame(...)
new("IndexedDataFrame",
ids=ids,
rownames=rowname
Thanks Kevin, your biased suggestion is perfect!
All the best,
David
On Wed, Nov 14, 2018 at 1:36 AM Kevin RUE wrote:
> Hi David,
>
> First off, I'd recommend introducing non-crucial changes like this one on
> the devel branch (3.9). The devel branch is the developers' primary
> playground. If
I don't want to derail this thread, but why is coerce2() necessary? Would
it be possible to fold its logic into as() without breaking too much?
Kylie,
It would help to see your code, with some pointers to where things break.
Michael
On Wed, Nov 14, 2018 at 5:36 AM Bemis, Kylie
wrote:
> Hi Her
It seems the short answer is:
yes, base::lengths() works and should be fast
If it either doesn't work or is slow, you should report it.
On Tue, Nov 13, 2018 at 3:33 PM Pages, Herve wrote:
> I'm going to try to provide some details, at the risk to confuse you even
> more.
>
>
> In BioC 3.8 / R
Hi Herve,
Thanks for the detailed reply. Using as() makes sense. Unfortunately my use
case makes it a little more complicated.
The issue comes from a combination of factors:
- My DataFrame subclasses track additional metadata for each row, separate from
the typical user-defined columns
- This
Hi David,
First off, I'd recommend introducing non-crucial changes like this one on
the devel branch (3.9). The devel branch is the developers' primary
playground. If you _really_ think that users can't live without those
vignette updates before the next release, then you can always `git
cherry-pi
Dear all,
I am the current maintainer of package 'plgem'. I've not been checking
out the code in a long time, but would like to commit a few changes
now. I noticed the transition from SVN to GIT. I installed Git for
Windows and tried accessing my repository, but noticed I need to
submit my public
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