Re: [Bioc-devel] persistent build errors in bioconductor package

2018-09-12 Thread Martin Morgan
I see, when you say > experiencing. When I check the error online, it says: > > "001E# service=git-upload-pack > > 0041ERR FATAL: unknown git/gitolite command: 'packages/powerTCR' > FATAL: unknown git/gitolite command: 'packages/powerTCR' > 001E# service=git-upload-pack > > 0041ERR FATAL: unk

[Bioc-devel] persistent build errors in bioconductor package

2018-09-12 Thread Hillary Koch
Hi again, I recently wrote about some build errors my bioconductor package is experiencing. When I check the error online, it says: "001E# service=git-upload-pack 0041ERR FATAL: unknown git/gitolite command: 'packages/powerTCR' FATAL: unknown git/gitolite command: 'packages/powerTCR' 001E# s

Re: [Bioc-devel] Bioc2019 planning committee

2018-09-12 Thread Martin Morgan
The location is driven primarily by willingness of local organizers to host; there is no current location set for BioC2020, so if you're interested... Martin On 09/12/2018 07:08 PM, Stephanie M. Gogarten wrote: Are there any plans to have another BioC on the west coast in the near future? t

[Bioc-devel] Bioconductor Git Credentials

2018-09-12 Thread John Gagnon
Hello, I recently had a package accepted but am unable to sign in to submit your SSH public key or github id to Bioconductor. I’m not sure if this is necessary to do since I submitted my app through GitHub in the first place but when I go to log in or create an account, I get the error message:

Re: [Bioc-devel] Bioc2019 planning committee

2018-09-12 Thread Stephanie M. Gogarten
Are there any plans to have another BioC on the west coast in the near future? thanks, Stephanie On 9/10/18 1:32 PM, Levi Waldron wrote: Hi all, I'm organizing a planning committee for Bioc2019 in New York City (at NYU and Rockefeller University), June 24-26. There is lots to be done includin

Re: [Bioc-devel] BiocManager updates / changes

2018-09-12 Thread Marcel Ramos
Dear Bioc-devs, We have successfully completed the migration from BiocInstaller to BiocManager. Together, we modified about 570 packages that were using old BiocInstaller code. Please ensure that your package(s) install / build / check without errors and that all dependencies are properly documen

Re: [Bioc-devel] Activating Account failed

2018-09-12 Thread Obenchain, Valerie
Hi, There was a bug in the code that added new accounts. The bug was fixed and your account has been added. Please try again to activate and log in. I see that 2 SSH keys were automatically from your ipumin github account. Once you login you'll be able to see these. Valerie On 09/12/2018 06

[Bioc-devel] Activation failure

2018-09-12 Thread Lang Ho Lee
Dear Mr. or Ms. I am trying to submit my SSH key, since my package, XINA was accepted to Bioconductor. However, I couldn't activate my ID and got the following message. langho...@gmail.com is not associated with a maintainer of a Bioconductor package. Please check the spelling or contact bioc-de

[Bioc-devel] Activating Account failed

2018-09-12 Thread 李普民
Hi, ipu...@163.com is associated with a maintainer of the primirTSS which has been accepted(https://github.com/Bioconductor/Contributions/issues/817). But I can not activate ipu...@163.com in https://git.bioconductor.org/BiocCredentials/account_activation/, and "ssh -T g...@git.bioconductor.org

Re: [Bioc-devel] Can ExperimentHub packages contain non-R data formats?

2018-09-12 Thread Shepherd, Lori
It depends on what you mean. We include those as our load methods generally are loading files into R for immediate use by a package. RDataClass, DispatchClass RDataPath If using the Bioconductor ExperimentHub - We can always create a new DispathClass if one existing isn't appropriate. The RD