Re: [Bioc-devel] EXTERNAL: Fwd: PREDA problems reported in the Multiple platform build/check report for BioC 3.7

2018-08-06 Thread Dario Strbenac
Good day, Similar to you, I am awaiting the restoration of sparsediscrim which was removed on the same day as PREDA. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia ___ Bioc-devel@r-project.org m

Re: [Bioc-devel] EXTERNAL: Fwd: PREDA problems reported in the Multiple platform build/check report for BioC 3.7

2018-08-06 Thread Shepherd, Lori
You can wait a little longer if you like. It might also be helpful to reach out to the samr maintainers to see if they have any intention of bringing it back onto CRAN. I would not recommend waiting too long, as the package will need to be fixed before the next release to avoid deprecation in

Re: [Bioc-devel] EXTERNAL: RSA key format

2018-08-06 Thread Obenchain, Valerie
Hi, On 08/06/2018 07:36 AM, j.j.goe...@lumc.nl wrote: Dear Valerie, Thanks for helping me out. 1) https://github.com/jellegoeman is my github account indeed but it has no public repositories so far so I guess you can�t see it for that reason? Possibly. Follow instruc

[Bioc-devel] Fwd: PREDA problems reported in the Multiple platform build/check report for BioC 3.7

2018-08-06 Thread Francesco Ferrari
Looks like a CRAN package is no more available, and this is triggering a problem with a “suggested” dependency * checking package dependencies ... ERROR Package suggested but not available: ‘samr’ which indeed has been removed from CRAN on July 20: https://cran.r-project.org/web/packages/samr/i

Re: [Bioc-devel] EXTERNAL: RSA key format

2018-08-06 Thread J.J.Goeman
Dear Valerie, Thanks for helping me out. 1) https://github.com/jellegoeman is my github account indeed but it has no public repositories so far so I guess you can't see it for that reason? 2) All except can j.j.goe...@lumc.nl be removed. How do I diagnose the "Permis

Re: [Bioc-devel] EXTERNAL: RSA key format

2018-08-06 Thread Obenchain, Valerie
Hi Jelle, 1) To see the SSH keys we have on file for you go to this site and login with j.j.goe...@lumc.nl: https://git.bioconductor.org/BiocCredentials/ It looks like you've activated your account and we have one key on file for you. The github username associated w

[Bioc-devel] RSA key format

2018-08-06 Thread J.J.Goeman
Dear All, It's been a long time that I haven't made any updates to globaltest, so I'm still not updated to the new git system (which I think is a very good idea). I'm having trouble connecting, however. When I use git fetch upstream I get "Permission denied (publickey)" I have uploaded my rsa

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel packagepages?

2018-08-06 Thread Martin Morgan
On 08/06/2018 01:30 AM, Anamaria Elek wrote: Hi everyone! Now this might be a silly question, but since this is my first time submitting to bioc, please ignore my ignorance. What I’d like to know is this: my package has been accepted, although not yet added to the devel bioc – is it ok if I