Re: [Bioc-devel] Handling larger data in vignette

2018-07-30 Thread Levi Waldron
There are also weekly "long test" builds with a 6h timeout: https://stat.ethz.ch/pipermail/bioc-devel/2017-November/012326.html [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo

Re: [Bioc-devel] Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0

2018-07-30 Thread Tim Triche, Jr.
are you sure his tmp directory isn't full --t On Mon, Jul 30, 2018 at 3:25 PM Leonardo Collado Torres wrote: > From Richard: > > > BiocManager::install("DelayedArray") > > Bioconductor version 3.7 (BiocManager 1.30.1), R 3.5.0 (2018-04-23) > > Installing package(s) 'BiocVersion', 'DelayedArray

Re: [Bioc-devel] Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0

2018-07-30 Thread Tim Triche, Jr.
BiocManager::install(whatever) doesn't work? biocLite is supposed to die, you see... --t On Mon, Jul 30, 2018 at 2:45 PM Leonardo Collado Torres wrote: > Hi bioc-devel, > > A co-worker of mine (Richard) tried several times to install the > DelayedArray package. We got a couple of errors but

Re: [Bioc-devel] Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0

2018-07-30 Thread Leonardo Collado Torres
>From Richard: > BiocManager::install("DelayedArray") Bioconductor version 3.7 (BiocManager 1.30.1), R 3.5.0 (2018-04-23) Installing package(s) 'BiocVersion', 'DelayedArray' trying URL 'https://bioconductor.org/packages/3.7/bioc/bin/windows/contrib/3.5/BiocVersion_3.7.4.zip' Content type 'app

[Bioc-devel] Is biocLite() working for you right now? Could be a problem on our side. Issue with DelayedArray install with a PC on R 3.5.0

2018-07-30 Thread Leonardo Collado Torres
Hi bioc-devel, A co-worker of mine (Richard) tried several times to install the DelayedArray package. We got a couple of errors but it ultimately looks like it's an internet connection problem. The truth is that might be something affecting us on our side since I can't access http://www.comunidadb

Re: [Bioc-devel] EXTERNAL: Re: Synching version numbers went wrong

2018-07-30 Thread Turaga, Nitesh
Typo, I mean 1.7.1 > On Jul 30, 2018, at 10:38 AM, ni41435_ca > wrote: > > Hi Shana, > > It seems that this occurred because of a merge gone bad and then followed by > a series of version changes which are wrong. > > I’ll just fix your version number to (1.7.2) for now and it’s your > re

Re: [Bioc-devel] EXTERNAL: Re: Synching version numbers went wrong

2018-07-30 Thread Turaga, Nitesh
Hi Shana, It seems that this occurred because of a merge gone bad and then followed by a series of version changes which are wrong. I’ll just fix your version number to (1.7.2) for now and it’s your responsibility to sync again with your Github. Best, Nitesh > On Jul 30, 2018, at 5:51 AM,

Re: [Bioc-devel] Synching version numbers went wrong

2018-07-30 Thread Mike Smith
Hi Shana, Sorry for the delay in replying - I've been on vacation. I tested this with one of my own packages and found the same problem. I'm not sure how you managed to commit the lower version number in the first place (I'm not going to test that since I'll get stuck too!) but I guess the logic