Re: [Bioc-devel] BiocManager now on CRAN

2018-07-24 Thread Leonardo Collado Torres
Hi Marcel, I noticed that https://gist.github.com/LiNk-NY/44cc844a169d5d96c777a69037dae653 doesn't include the experiment data and workflow packages. I updated mine preemptively (derfinderData and recountWorkflow). By the way, how do I sync experiment data package updates? I forgot how to do so.

Re: [Bioc-devel] BiocManager to install Depends/Imports/Suggests

2018-07-24 Thread Bernd Klaus
Dear all, we recently observed a similar behavior due to a bug in the remotes package which has been fixed in the github  version of the package: https://github.com/r-lib/remotes/commit/d3a6766c0bcb456b82a0b06608f6149 fe4f5d83e essentially, internally, somewhere, it would do  something like:  

Re: [Bioc-devel] BiocManager to install Depends/Imports/Suggests

2018-07-24 Thread Levi Waldron
On Fri, Jul 20, 2018 at 10:26 AM Martin Morgan < martin.mor...@roswellpark.org> wrote: > I think it's a Mac thing, and it's decided to install binary (tgz), and > the annotation packages are source (tar.gz). > > Have you set options(pkgType = "both") ? > Thanks Martin, and sorry for the slow repl