[Bioc-devel] How best to remap S4Vectors::Hits indices?

2018-05-22 Thread Pariksheet Nanda
Hi folks, I'm working on a package that does some trivial GRanges position classifications; primarily to standardize nomenclature according to the literature in workflows. The API for S4Vectors::Hits() generally doesn't seem amenable to modify Hits objects, except for the remapHits() feature (whi

[Bioc-devel] Windows, normalizePath(), and non-ASCII characters

2018-05-22 Thread Mike Smith
In trying to diagnose this issue at https://support.bioconductor.org/p/108548/ I've found some weird behaviour with Windows, normalizePath(), and non-ASCII characters. Essentially, if I run normalizePath() recursively on a path that contains 'é' (I haven't tried other characters) something 'chang

Re: [Bioc-devel] Update existing packages and change name

2018-05-22 Thread Martin Morgan
On 05/22/2018 05:46 AM, Sokratis Kariotis wrote: Hi all, After lots of tries we decided to follow your second suggestion. How can we stop the support for 32-bit windows? An obvious place to start is with a less comprehensive example data set; > geo_sum_data class: SummarizedExperiment dim:

Re: [Bioc-devel] Update existing packages and change name

2018-05-22 Thread Sokratis Kariotis
Hi all, After lots of tries we decided to follow your second suggestion. How can we stop the support for 32-bit windows? Cheers, Sokratis On 22 March 2018 at 15:14, Hervé Pagès wrote: > Hi Sokratis, > > On 03/22/2018 06:13 AM, Sokratis Kariotis wrote: > >> Hey all, >> >> I have been updating