Switching aligners is very likely going to affect the results. You
could have Rbowtie as the built-in aligner, and then provide Rsubread
support as a simple add-on package.
On Sat, May 19, 2018 at 2:49 AM, Bhardwaj, Vivek
wrote:
> ??I think one option for me would be to switch to RBowtie instead
??I think one option for me would be to switch to RBowtie instead of Rsubread,
since this seems to have a windows binary. I would try this as soon as I have
access to a windows system.
Vivek Bhardwaj
PhD Candidate | International Max Planck Research School
Max Planck Institute of Immu
@All thanks for your comments
I have provided Rsubread mapping wrapper as an optional step in the pipeline.
Users can continue the analysis after mapping with their tool of choice as
well. Therefore I added it in "suggests" and skip running it in the example and
don't evaluate that chunk in the
