Just noticed this thread. I will look into this and hopefully fix it.
On Sun, Apr 29, 2018 at 6:12 PM, Hervé Pagès wrote:
> Hi,
>
> I made progress on this. This has actually nothing to do with Java.
> You get the same thing with the flexmix package. What rJava and flexmix
> have in common is tha
Sure thing, we'll wait. Thanks, Val
On Sun., 29 Apr. 2018, 9:01 pm Obenchain, Valerie, <
valerie.obench...@roswellpark.org> wrote:
> Hi guys,
>
> I'm not sure if this got resolved. If it didn't, I'd recommend waiting
> until after the 3.7 branching tomorrow.
>
> Thanks.
> Val
>
>
>
> On 04/29/201
Hi guys,
I'm not sure if this got resolved. If it didn't, I'd recommend waiting until
after the 3.7 branching tomorrow.
Thanks.
Val
On 04/29/2018 09:37 AM, Peter Hickey wrote:
I'm still unable to push large files after a fresh clone. I *am* able to push
smaller changes (I just tweaked the DES
Hi,
I made progress on this. This has actually nothing to do with Java.
You get the same thing with the flexmix package. What rJava and flexmix
have in common is that they both define a method on the base::unique()
implicit S4 generic.
The issue actually originates in the methods package. In ord
I'm still unable to push large files after a fresh clone. I *am* able to
push smaller changes (I just tweaked the DESCRIPTION to test this). But I
get the "Error: file larger than 5 Mb" error when I try to update larger
objects (e.g., BS.cancer.ex.fit.rda which is 40.8 Mb).
On Sun, 29 Apr 2018 at
Hi Pete,
For developers there is no reason not to use the SSH protocol. But there are
many people who’d like to clone the repo and look at it on their local machine.
Take for example packages which are not maintained on both the bioconductor
server and Github. For these packages, a good way for
Can you try with a fresh clone of the repo?
Best,
Nitesh
> On Apr 29, 2018, at 10:21 AM, Peter Hickey wrote:
>
> Nitesh, I am still getting the "Error: file larger than 5 Mb" error.
>
> On Sun, 29 Apr 2018 at 09:59 Turaga, Nitesh
> wrote:
> Hi Pete,
>
> This should be resolved now.
>
>
Ah, thanks both Joris and Nitesh. I didn't appreciate that SSH access is
limited to those with a public key registered on the git server.
On Sun, 29 Apr 2018 at 11:50 Turaga, Nitesh
wrote:
> Hi Pete,
>
> For developers there is no reason not to use the SSH protocol. But there
> are many people w
Using SSH will only work when they have a public key on the git server
registered. Otherwise they will get the dreaded "Please make sure you have
the correct access rights and the repository exists" error message. The
same happens when I forget to add the correct key to my pageant. In my
humble opi
Nitesh, I am still getting the "Error: file larger than 5 Mb" error.
On Sun, 29 Apr 2018 at 09:59 Turaga, Nitesh
wrote:
> Hi Pete,
>
> This should be resolved now.
>
> Best,
>
> Nitesh
> > On Apr 29, 2018, at 9:50 AM, Peter Hickey
> wrote:
> >
> > Thanks, Val. I'm getting an error about "too la
Hi Pete,
This should be resolved now.
Best,
Nitesh
> On Apr 29, 2018, at 9:50 AM, Peter Hickey wrote:
>
> Thanks, Val. I'm getting an error about "too large files" when I try to
> push (see below). Is there a different workflow for pushing an experiment
> data package or am I doing something e
The one-liner on the package landing page describing how to check out
a package from the git repo uses HTTPS rather than ssh, e.g.:
# From https://bioconductor.org/packages/bsseq/
git clone https://git.bioconductor.org/packages/bsseq
However, as a developer we should be using the SSH protocol
(ht
Thanks, Val. I'm getting an error about "too large files" when I try to
push (see below). Is there a different workflow for pushing an experiment
data package or am I doing something else wrong? bsseqData predates the svn
-> git transition.
Thanks,
Pete
$ git push origin master
Counting objects:
Dear all,
I’m trying to understand how bplapply works with memory and what could be
causing the following error - Error: 'bplapply' receive data failed: error
reading from connection
When I get this error the system (ubuntu linux 16.04) seems to have filled up
it’s memory then severs the conne
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