Hi guys,
I have identified the problem.
It's the packages I imported have same function name, so the previous
functions get overwritten.
Thanks
Ruqian
On Sun, Apr 15, 2018 at 10:18 AM, Ruqian Lyu wrote:
> Hi guys,
>
> I'm wondering if any of you have met this warning message :
>
> Warning:
Hi guys,
I'm wondering if any of you have met this warning message :
Warning: replacing previous import 'SummarizedExperiment::start' by
'stats::start' when loading 'singscore'
Warning: replacing previous import 'SummarizedExperiment::end' by
'stats::end' when loading 'singscore'
I have import S
Last night I checked in a workaround to S4Vectors. It just calls
getClass("Annotated") instead of passing the class name directly.
I'll check in a simple fix for is() today maybe to R 3.6 (devel) and
then we'll be good for now.
On Sat, Apr 14, 2018 at 8:59 AM, Martin Morgan
wrote:
> On 04/14/201
On 04/14/2018 07:21 AM, Vincent Carey wrote:
But Annotated is defined in S4Vectors and RNeXML; the latter is not a
Bioconductor package.
The likelihood of collisions among class names defined in different
packages seems pretty high
as S4 adoption grows. So requiring a systematic approach to dis
But Annotated is defined in S4Vectors and RNeXML; the latter is not a
Bioconductor package.
The likelihood of collisions among class names defined in different
packages seems pretty high
as S4 adoption grows. So requiring a systematic approach to disambiguating
class references seems inevitable.
Hi Zheng,
I can totally reproduce this on my Ubuntu laptop:
library(rJava)
library(IRanges)
unique(IRanges())
# Error in validObject(.Object) :
# invalid class “MethodWithNext” object: Error : C stack usage
7969396 is too close to the limit
See my seesionInfo() at the end of this
How about renaming Annotated? Isn't having 2 classes around with the
same name fundamentally a bad situation? No amount of workarounds will
change that.
H.
On 04/12/2018 04:06 PM, Michael Lawrence wrote:
Yea, good idea, I was thinking of supporting :: in class names and
parsing them out. In cod
