Re: [Bioc-devel] git push denied

2018-03-19 Thread Turaga, Nitesh
Hi Laurent, Are you sure you are using either of the private keys associated with these public keys? You have to make sure to use the correct private key. ssh-rsa B3NzaC1yc2EDAQABAAABAQDW56mKIG/pkMMXmkNAgMC1Obx8Tz4D2OAnmkQNBM98NftJeerOCoIvg+7Dqh/PGnDpwIDwW9qMhvq5IalHXr+o0/XB1upPl9J0Xj2

[Bioc-devel] git push denied

2018-03-19 Thread Laurent Gatto
Dear Bioconductor admins, I tried to push to a data package to the Bioconductor git server, leading to the following error Counting objects: 1671, done. Delta compression using up to 4 threads. Compressing objects: 100% (1324/1324), done. Writing objects: 100% (1482/1482), 76.14 MiB | 411.00 KiB

Re: [Bioc-devel] deleting irrelevant legacy objects from git repo?

2018-03-19 Thread Turaga, Nitesh
Another note, it is not be possible for you to push back to the Bioconductor server once the repo is cleaned. Please do this on your Github repo, and let me know. I will sync the cleaned repo. To further explain, you need force push privileges to Bioconductor to make this happen, and these are

Re: [Bioc-devel] EXTERNAL: amplican tokay2 i386 error

2018-03-19 Thread Martin Morgan
On 03/19/2018 01:45 PM, Marcel Ramos wrote: Hi Kornel, I downloaded your package from our git repo and ran check locally on Windows 7. It seems like there are some issues with the `data.table` (version 1.10.4-3) package. Here is my result for the `i386` architecture: R CMD check --force-mult

Re: [Bioc-devel] EXTERNAL: amplican tokay2 i386 error

2018-03-19 Thread Marcel Ramos
Hi Kornel, I downloaded your package from our git repo and ran check locally on Windows 7. It seems like there are some issues with the `data.table` (version 1.10.4-3) package. Here is my result for the `i386` architecture: >>> R CMD check --force-multiarch --no-vignettes amplican_1.1.6.tar.gz [t

Re: [Bioc-devel] No Windows binary for GenomicRanges

2018-03-19 Thread Hervé Pagès
Hi Gordon, We're seeing a number of abnormal/unexpected TIMEOUTs on tokay2: https://bioconductor.org/checkResults/3.7/bioc-LATEST/tokay2-index.html#show=timeout These TIMEOUTs have been preventing the Windows binaries of the corresponding packages to propagate. We're currently investigating th

Re: [Bioc-devel] Applying changes to existing package

2018-03-19 Thread Martin Morgan
On 03/19/2018 08:28 AM, Christian Oertlin wrote: Thank you for the explanation - I indeed ran build and check but before the merge with the upstream branch. So this error slipped through. For the RELEASE_3_6 branch the version should be 1.0.1 then? just to be sure. Yes, the current release

Re: [Bioc-devel] Applying changes to existing package

2018-03-19 Thread Martin Morgan
On 03/19/2018 03:20 AM, Christian Oertlin wrote: Hej, I just wanted to check the build report/version number of the anota2seq package, however it is not listed in the build report anymore. http://bioconductor.org/checkResults/ (it cannot be found in this list anymore- which was the case p

Re: [Bioc-devel] Applying changes to existing package

2018-03-19 Thread Christian Oertlin
Thank you for the explanation - I indeed ran build and check but before the merge with the upstream branch. So this error slipped through. For the RELEASE_3_6 branch the version should be 1.0.1 then? just to be sure. From: Martin Morgan [martin.mor...@rosw

Re: [Bioc-devel] Applying changes to existing package

2018-03-19 Thread Christian Oertlin
Hej, I just wanted to check the build report/version number of the anota2seq package, however it is not listed in the build report anymore. http://bioconductor.org/checkResults/ (it cannot be found in this list anymore- which was the case prior to the update) what could have happened? Chris