You could look at the rtracklayer API. For example, using gets functions
like track<-() and range<-() to set track and region may be more natural to
R users. Then again, if there were endomorphic functions add_track() and
set_range(), the API would support chaining. There should be no need to
expli
Gabe and Levi made a good case for supporting GRanges in IGV. Looking at the
GenomicRanges vignettes, it appears that many of Herve’s introductory examples
have GC content as the mcols column of interest. Would that be a good test
and demo for IGV? Or perhaps some other genomic quantity, o
Hi Klara,
I've added alpae to the roma package. Your supervisor will need to complete
this form and use alpae as the username:
https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform
Once the form is submitted we'll get the SSH key automatically from
Hi Bioc team,
I am currently maintaining the package roma in the devel version - I just
wanted to ask whether I am able to add my supervisor as an additional
maintainer with access to the repository? His github username is alpae .
Best,
Klara
___
Bi
Hi,
There is a max file size restriction of <= 5MB for software packages. This
information was missing from our package guidelines so I've just added it.
The built tarball for a software package is restricted to <= 4MB so files over
5 MB aren't a good idea. Why so much data in the software pack
It looks like this was just a latency issue for updating. After the build
completes it can take some additional time for the files to be redirected.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo
