Re: [Bioc-devel] Duplicate commits in mimager package

I recently had a similar problem with my FamAgg and ensembldb packages. I had to remove the duplicated commits with `git rebase -i ` (i.e. interactive rebasing). During/after that I had to fix some merge conflicts and ended overwriting my github master with the cleaned history (`git push -f orig

Re: [Bioc-devel] failing update Bioconductor package psygenet2r

Thanks a lot, Valerie. The changes appear in my Github repo. And remotes still correct, I guess... git remote -v origin https://github.com/aGutierrezSacristan/psygenet2r (fetch) origin https://github.com/aGutierrezSacristan/psygenet2r (push) upstream g...@git.bioconductor.org:packages/psygenet

Re: [Bioc-devel] failing update Bioconductor package psygenet2r

Hard to say. If you followed all steps at https://bioconductor.org/developers/how-to/git/push-to-github-bioc/ with no errors the changes should have been pushed to the repo on git.bioconductor.org. When I do a `git log` on the repo from g...@git.bioconductor.org

Re: [Bioc-devel] Duplicate commits in mimager package

Thanks, Nitesh, There are about 20 dupes. Here are a few examples: - 2c01b08 and c0f7ed1 - 77a5d90 and 464edd9 - b952032 and 9abf5dd On Mar 6, 2018, 1:27 PM -0500, Turaga, Nitesh , wrote: > Hi Aaron, > > You cannot force push to the Bioconductor server as it is prevented by a > pre-receive hook

Re: [Bioc-devel] Duplicate commits in mimager package

Hi Aaron, You cannot force push to the Bioconductor server as it is prevented by a pre-receive hook on our end. There are no duplicate commits on the Bioconductor version of the package right now. Can you point the commits which are duplicated on a fresh clone of the mimager package from git.b

[Bioc-devel] Duplicate commits in mimager package

Hi all, I attempted syncing my existing GitHub repo for the mimager package with git.bioconductor.org and was left with many duplicate commits, as documented. Hoping to keep my history intact, I performed a rebase to clean-up the dupes (giving preference to commits with git-svn-ids) but can’t f

Re: [Bioc-devel] getuid, geteuid, gegid, getegid on mingw

On 03/05/2018 11:53 AM, August Guang wrote: I got approval from the SeqAn (www.seqan.de) team to repackage their headers for easy use in a few other R packages I am writing. This package has been called RSeqAn. (https://github.com/compbiocore/RSeqAn) However, SeqAn doesn't have support for min

Re: [Bioc-devel] failing update Bioconductor package psygenet2r

Dear Valerie, Sorry again, I still have problems. I updated it yesterday, I was able to do all the steps without problems but today I was checking the Bioconductor devel and no update has been registered. Last Changed Date: 2017-10-30 12:54:19 -0500 (Mon, 30 Oct 2017) How should I proceed? What I

[Bioc-devel] SVN to GIT

Dear all, I try a couple of weeks ago to move to git to maintain the HiTC package, but I did not succeed. I followed the guidelines here ; https://bioconductor.org/developers/how-to/git/maintain-github-bioc/ But when I try to fetch the BioC repo, it does not work $ git fetch upstream The authe