Strongly seconded. We will miss you Andrzej!
On Wed, Feb 28, 2018 at 6:53 PM, Martin Morgan <
martin.mor...@roswellpark.org> wrote:
> I want to extend a sincere thanks to Andrzej Oleś. Andrzej has been making
> many visible and hidden contributions to the project over the last several
> years. H
I want to extend a sincere thanks to Andrzej Oleś. Andrzej has been
making many visible and hidden contributions to the project over the
last several years. Highlights include:
- Extensive development of the BiocStyle package
- Modifying our build system to use git rather than svn
- Sup
On 02/28/2018 09:35 AM, Lluís Revilla wrote:
Thanks Martin for looking into it.
I think that is the reason of the problem, the timeline of the errors
building certainly match.
I couldn't find this documented in Writing R Extensions, is this
behavior documented somewhere?
I'm not sure if its
Hello,
I believe I noticed two bugs in rhdf5.
I'm using R 3.3.3 on Windows64, 2.18.0 linking to C-library HDF5 1.8.7
1. problem:
h5read(..., bit64conversion='double')
converts int32 columns to double as well. I did not expect that the
option would affect 64bit integer types only.
Is this inten
Thanks Martin for looking into it.
I think that is the reason of the problem, the timeline of the errors
building certainly match.
I couldn't find this documented in Writing R Extensions, is this behavior
documented somewhere?
Lluís
On 28 February 2018 at 15:03, Martin Morgan
wrote:
> Actually,
Actually, looking at your github repository, I see you have two
vignettes, you have renamed one from vignette2.Rmd to
BioCor_advanced.Rmd, and that this vignette now collates before the
original one. I believe that vignettes are built in the same R process,
so the packages loaded in the first v
On 02/28/2018 05:31 AM, Lluís Revilla wrote:
Dear bioconductor core,
The development version of my package hosted in Github cannot be build. It
seems that another package is loaded when it shouldn't and masks the
functions that are used in the vignette. (In case anyone wants to help here
is th
Dear Matthias and Robert,
My namespace doesn't import that package. It is mentioned in the
Description file in Suggests, and on the same vignette it is and loaded but
after the line where the error is reported.
The error is reported on lines 143-148 (BioCor.Rmd) and the library is
loaded on line 2
Lluis,
something you can do in you NAMESPACE to follow the advice below from
Matthias if you are importing the functionality of a whole package is:
import(pkgyouneed, except=functionmethodyoudefine)
in this way, you're importing everything except that particular function
or method that you a
DearLluis,
how is your namespace defined? Do you use 'import' or 'importFrom' to
load the package in question? If you are currently using 'import' to
load all exports from the package, you could switch to 'importFrom' and
exclude the function that causes the problems and then use the
double-co
Dear bioconductor core,
The development version of my package hosted in Github cannot be build. It
seems that another package is loaded when it shouldn't and masks the
functions that are used in the vignette. (In case anyone wants to help here
is the link to the StackOverflow question:
https://sta
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