Re: [Bioc-devel] Update existing packages and change name

2018-02-21 Thread Obenchain, Valerie
Hi Sokratis, Unfortunately you can't rename a package ... and there is no such thing as a 'sub package'. Maybe you meant sub-package terms of dependencies. If you have new data to add that's independent of what's in pathprintGEOData you can create a new data package. I'm not sure what you mean

Re: [Bioc-devel] rsvg on mac

2018-02-21 Thread Kevin Horan
Ok, I understand. Is it safe to assume that the rsvg package would be available by the time the next bioconductor release occurs? In that case I can just plan to re-enable that function at release time. Otherwise I will have to find another workaround for it. Thanks. Kevin On 02/13/2018 0

Re: [Bioc-devel] ShortRead::countLines integer overflow with large fastq files

2018-02-21 Thread Thomas Girke
Great thanks! Thomas On Wed, Feb 21, 2018 at 3:11 AM Martin Morgan wrote: > Thanks Thomas, countLines() in ShortRead 1.37.3 and later) will return > numeric() rather than integer() and hence support large files. > > Martin > > On 02/20/2018 10:08 PM, Thomas Girke wrote: > > Dear Martin, > > > >

[Bioc-devel] Update existing packages and change name

2018-02-21 Thread Sokratis Kariotis
Hey all, I am updating 2 of my packages (pathprint & pathprintGEOData) with considerably more data and a few code updates. I also want to change the name of the data package to reflect the new content. Can the package name be changed or do I have to create new sub-packages? Thanks in advance. Chee

Re: [Bioc-devel] ShortRead::countLines integer overflow with large fastq files

2018-02-21 Thread Martin Morgan
Thanks Thomas, countLines() in ShortRead 1.37.3 and later) will return numeric() rather than integer() and hence support large files. Martin On 02/20/2018 10:08 PM, Thomas Girke wrote: Dear Martin, countLines in ShrotRead returns the line counts as integers which appears to create problems wi