Re: [Bioc-devel] Version bumps

2018-01-22 Thread Yuande Tan
Dear Martin, I have install git and also built github and created public and private keys and built config for automatically loading keys into the ssh-agent and store passphrases in my keychain. my .ssh has files: ~/.ssh/config ~/.ssh/id_rsa ~/.ssh/id_rsa.pub ~/.ssh/known_hosts I tried ssh g

Re: [Bioc-devel] Push to git not updating correctly

2018-01-22 Thread Turaga, Nitesh
Hi, I have checked your package and have not seen a commit after commit 84c72291990fadd47b657b410e37b52d6b68f008 Author: Clare Pacini Date: Tue Oct 31 15:52:53 2017 + Update egs Please make sure you are pushing not just to your GitHub, but also to the bioconductor git repo. Best

Re: [Bioc-devel] project templating tools

2018-01-22 Thread Michael Lawrence
I have always just advocated using R packages as a means to organize analyses, with an "analysis" subdirectory serving as a sort of scratch space. The DESCRIPTION serves as a readme, there are places for reusable functions (/R), data (/data), reports (/vignettes), etc. Several groups here follow th