Re: [Bioc-devel] Bioconductor build reports as a tidy data frame

2017-11-17 Thread Sean Davis
On Fri, Nov 17, 2017 at 4:13 PM, Hervé Pagès wrote: > This is very nice! Thanks Sean. Might use it in pre-release times to > track down package failures and chase people ;-) > I am always happy to help come up with new ways to remind folks of their package failures. > One minor thing: do you t

Re: [Bioc-devel] Bioconductor build reports as a tidy data frame

2017-11-17 Thread Hervé Pagès
This is very nice! Thanks Sean. Might use it in pre-release times to track down package failures and chase people ;-) One minor thing: do you think you could have the install, buildsrc, checksrc, buildbin stages in that order in the hist plot? On my Christmas list: How hard would it be to have th

[Bioc-devel] Bioconductor build reports as a tidy data frame

2017-11-17 Thread Sean Davis
Just in case some developers would like to review the Bioconductor build report as computable data in R: http://bit.ly/2zKL3M3 Sean -- Sean Davis, MD, PhD Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda, MD 20892 https://seandavi.github.io/ https://tw

Re: [Bioc-devel] annotation data not updated?

2017-11-17 Thread Shepherd, Lori
I believe this now should be corrected. I had updated standard org but not the additional orgdb. Please let me know if there seems to be any other issues. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets B

Re: [Bioc-devel] OrgDb in AnnotationHub

2017-11-17 Thread Shepherd, Lori
The OrgDbs in AnnotationHub are now back available. Thank you for your patience. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: Bioc-devel

Re: [Bioc-devel] Git access

2017-11-17 Thread Turaga, Nitesh
Hi Fatemah, You can try the new key to see if that is the one assigned. Have you tried it? If not, then you’d probably have to resubmit a new key. Best, Nitesh > On Nov 17, 2017, at 9:26 AM, Fatemehsadat Seyednasrollah > wrote: > > Thanks! though I have sent the key around three weeks ag

Re: [Bioc-devel] Git access

2017-11-17 Thread Fatemehsadat Seyednasrollah
Thanks! though I have sent the key around three weeks ago. Actually, I have sent two keys. The latest one is the one which was sent on 29th Oct. How can I be sure if the latest key is assigned? I dont have access to the first key anymore. And yes I am trying to get access to ROTS git. Best, Fate

Re: [Bioc-devel] Git access

2017-11-17 Thread Turaga, Nitesh
We changed this policy as of yesterday to reduce confusion for people who are submitting keys. Have you tried to access your package (ROTS) ? We have a key on file for you. If you have submitted your key a while ago, then my suggestion would be try to first access your package. Best, Nitesh

Re: [Bioc-devel] Git access

2017-11-17 Thread Fatemehsadat Seyednasrollah
Sorry forgot to mention the google form was sent 29th of Oct. BR, Fatemeh From: Bioc-devel on behalf of Fatemehsadat Seyednasrollah Sent: Friday, November 17, 2017 3:44 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] Git access Hi, Based on the q

[Bioc-devel] Git access

2017-11-17 Thread Fatemehsadat Seyednasrollah
Hi, Based on the question #17 from the below link: https://bioconductor.org/developers/how-to/git/faq/ I need to receive an email from maintai...@bioconductor.org, regarding confirmation of addition or invalid entry after submitting the SSH key to the google form. But I havent. What should I do

Re: [Bioc-devel] Do we have an unpacked archive for BioC, so that we can URL link to individual files ?

2017-11-17 Thread Martin Morgan
On 11/17/2017 04:08 AM, Neumann, Steffen wrote: Hi, I would like to have a URL to individual files we have in BioC packages. This is useful e.g. if I need test data from, say, the msdata package, in another context. In the SVN days, I was able to point directly into the SVN repo with readonly:r

[Bioc-devel] Do we have an unpacked archive for BioC, so that we can URL link to individual files ?

2017-11-17 Thread Neumann, Steffen
Hi, I would like to have a URL to individual files we have in BioC packages. This is useful  e.g. if I need test data from, say, the msdata package, in another context. In the SVN days, I was able to point directly into the SVN repo with readonly:readonly access. We also had the (now deprecat