Re: [Bioc-devel] Query bioconductor.org for what the current release version is?

2017-11-16 Thread Henrik Bengtsson
Awesome - got even more than I wished for. Thxs /Henrik On Thu, Nov 16, 2017 at 5:52 PM, Turaga, Nitesh wrote: > Hi Henrik, > > Try https://www.bioconductor.org/config.yaml > > You should have the essential information in there— > > release_version: "3.6" > > Hope this is what you are lo

Re: [Bioc-devel] NEWS file hasn't been updated in the devel branch of package cbaf

2017-11-16 Thread A.E.S.
Also, you know you can refresh a webpage keypressing Ctrl+R? well, Ctrl+Shift+R force-refreshes the webpage (clearing the cache). Hope it helps. Cheers! On Thu, 16 Nov 2017 10:00:34 -0800 Hervé Pagès wrote: > I didn't do anything and the file at the URL has not changed since > last time I checke

Re: [Bioc-devel] Query bioconductor.org for what the current release version is?

2017-11-16 Thread Turaga, Nitesh
Hi Henrik, Try https://www.bioconductor.org/config.yaml You should have the essential information in there— release_version: "3.6" Hope this is what you are looking for. Nitesh > On Nov 16, 2017, at 8:09 PM, Henrik Bengtsson > wrote: > > Hi. Is there a way, without using

[Bioc-devel] Query bioconductor.org for what the current release version is?

2017-11-16 Thread Henrik Bengtsson
Hi. Is there a way, without using R, to query bioconductor.org (or any other reliable/maintained resources) for what the current release version of Bioconductor is? Something like: $ curl https://bioconductor.org/api/version 3.6 or possibly something fancy like: $ curl https://bioconductor.org

[Bioc-devel] OrgDb in AnnotationHub

2017-11-16 Thread Shepherd, Lori
The OrgDb's that we normally offer in AnnotationHub that are not offered as our Standard OrgDb packages are currently unavailable in Bioc 3.6. We are updating the files and will notify when they are back online. Thank you for your understanding. Lori Shepherd Bioconductor Core Team Roswell

Re: [Bioc-devel] NEWS file hasn't been updated in the devel branch of package cbaf

2017-11-16 Thread Hervé Pagès
I didn't do anything and the file at the URL has not changed since last time I checked it (more than 6h ago). As I said earlier it's not uncommon to experience caching issues. It can help to restart your browser to clear them. Downloading the file with wget or curl e.g. wget http://bioconductor

Re: [Bioc-devel] batchtools support in BiocParallel

2017-11-16 Thread Martin Morgan
On 11/16/2017 11:41 AM, Steve Lianoglou wrote: Hi all, Given BatchJobs' end-of-life status, has there been any thought/discussion about adding support for its successor batchtools (https://github.com/mllg/batchtools) to BiocParallel? I skimmed the bioc-devel list but haven't seen any mention of

Re: [Bioc-devel] NEWS file hasn't been updated in the devel branch of package cbaf

2017-11-16 Thread Hervé Pagès
On 11/16/2017 05:15 AM, Arman Shahrisa wrote: Hi Hervé, I can still see the old NEWS file over there. Maybe you have mistakenly opened the stable branch (which is up to date and has no problem). My problem is with the devel branch. Even the NEWS file has the version of older package. Maybe it

[Bioc-devel] batchtools support in BiocParallel

2017-11-16 Thread Steve Lianoglou
Hi all, Given BatchJobs' end-of-life status, has there been any thought/discussion about adding support for its successor batchtools (https://github.com/mllg/batchtools) to BiocParallel? I skimmed the bioc-devel list but haven't seen any mention of it. Sorry if I missed something. Thanks! -steve

Re: [Bioc-devel] NEWS file hasn't been updated in the devel branch of package cbaf

2017-11-16 Thread Arman Shahrisa
Hi Herv�, I can still see the old NEWS file over there. Maybe you have mistakenly opened the stable branch (which is up to date and has no problem). My problem is with the devel branch. Even the NEWS file has the version of older package. Maybe it is because of the error during package building. c

Re: [Bioc-devel] NEWS file hasn't been updated in the devel branch of package cbaf

2017-11-16 Thread Hervé Pagès
Hi Arman, On 11/15/2017 01:08 PM, Arman Shahrisa wrote: Hi, I’m the maintainer of package cbaf. The last version of cbaf in devel branch is available at bioconductor.org. However, due to an unknown reason, the NEWS file hasn’t been updated to the newest version (It is from the previous version