Re: [Bioc-devel] How much does it takes for a package to appear at Bioconductor.org after a push?

2017-11-13 Thread Arman Shahrisa
I apologize. It was better to mention the package name. Thank you very Much for your assistance. The devel branch of cbaf has the version of 1.1.1 . The error happened for Windows and Linux check is caused by the genefilter package. The error for genefilter package Itself is caused by two una

Re: [Bioc-devel] How much does it takes for a package to appear at Bioconductor.org after a push?

2017-11-13 Thread Martin Morgan
How come you guys are so secretive about what package you're talking about? ;) Check the 'nightly' builds to see that your package has been built. http://bioconductor.org/checkResults/3.7/bioc-LATEST/ Note that the nightly builds do sometimes fail, so check the date at the top center of the

Re: [Bioc-devel] inconsistent metadata when deleting a column from a DataFrame

2017-11-13 Thread Michael Lawrence
This is a bug. I a fix into devel. It involved some refactoring. Basically moved code that already handled this case from [[<-,CompresedList to [[<-,List and added a setListElement,CompressedList. This tightens the role of setListElement(): it just sets list elements (no removal, no names, no meta

Re: [Bioc-devel] Question about external algorithms to Bioconductor package

2017-11-13 Thread A.E.S.
On Sun, 12 Nov 2017 22:22:56 + Ryan Thompson wrote: > Hi, > > I don't know the Bioconductor policy for packages that rely on > external tools, but for the specific features you mention, there are > Bioconductor packages to accomplish most or all of them. You can use > samtools via Rsamtools,

[Bioc-devel] inconsistent metadata when deleting a column from a DataFrame

2017-11-13 Thread Alejandro Reyes
Hello, I noticed that when I delete a column from a DataFrame by assigning it to NULL, the column is deleted from the DataFrame but the corresponding element-wise metadata is not deleted. > library(S4Vectors) >