Hi,
I don't know the Bioconductor policy for packages that rely on external
tools, but for the specific features you mention, there are Bioconductor
packages to accomplish most or all of them. You can use samtools via
Rsamtools, you can use the Rsubread package in place of bowtie for
alignment, an
Hi,
I have developed a package and is current under review from
Bioconductor. In the future I am considering of making some changes to
the package, basically adding more functions etc.
My package is currently a peak calling algorithm where the input it gets
is either a BAM or SAM format. Because in
