[Bioc-devel] GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs

library(GEOmetadb) if(!file.exists('GEOmetadb.sqlite')) getSQLiteFile() con <- dbConnect(SQLite(),'GEOmetadb.sqlite') dbListFields(con,'gse') ## [1] "ID" "title" ## [3] "gse" "status" ## [5] "submission_date" "last_update_date" ## [7] "pubmed_id"

Re: [Bioc-devel] Bioconductor 3.6 release: update NEWS

On 10/14/2017 11:05 AM, Stian Lågstad wrote: Hi, What should the NEWS file look like? Are there guidelines somewhere? the basic requirement is that it be parsed by util::news(); using an 'Rd' format is most robust. A couple of examples include https://github.com/Bioconductor/BiocParallel

Re: [Bioc-devel] EXTERNAL: Increase timeout for mzR on Windows?

I recognize that the code base is pretty complex (and that mass spec libraries are a mess at times), but could there be advantages to modularizing the code into more than 1 package, with a mzR master package. Could that help with linking etc? Best, Kasper On Fri, Oct 13, 2017 at 4:24 PM, Neumann,

Re: [Bioc-devel] Bioconductor 3.6 release: update NEWS

Hi, What should the NEWS file look like? Are there guidelines somewhere? Also, where should it be located? This page says `inst/NEWS`, but I see many packages has the file at root level. On Fri, Oct 13, 2017 at 5:16 PM, Obenchain, Val

Re: [Bioc-devel] EXTERNAL: Re: Cannot move 'xps' to GIT

Dear Turaga, As you suggested, I did: $ git remote set-url origin g...@github.com:cstrato/xps.git $ git remote -v origin g...@github.com:cstrato/xps.git (fetch) origin g...@github.com:cstrato/xps.git (push) upstreamg...@git.bioconductor.org:packages/xps.git (fetch) upstreamg...