Re: [Bioc-devel] [Bioconductor/Contributions] DMCHMM (#430)

2017-08-11 Thread Turaga, Nitesh
Hi Farhad, Please be patient. We are going to review your package soon. Best, Nitesh > On Aug 11, 2017, at 11:40 AM, Farhad Shokoohi wrote: > > Hello, > > Can you update me on the status of reviewing my package DMCHMM? > > Thank you > -- > Farhad Shokoohi, > Assistant Professor > > Off

Re: [Bioc-devel] EOW agenda: Aug 11

2017-08-11 Thread Obenchain, Valerie
Oops. Sent to wrong address - sorry for the noise. Valerie On 08/11/2017 08:41 AM, Obenchain, Valerie wrote: # Sprint update # Builds - no Mac builds for devel today # SPB # Package Reviews # Mailing lists ## Support Site: Martin looking at this one: Rgraphviz installation fails

[Bioc-devel] EOW agenda: Aug 11

2017-08-11 Thread Obenchain, Valerie
# Sprint update # Builds - no Mac builds for devel today # SPB # Package Reviews # Mailing lists ## Support Site: Martin looking at this one: Rgraphviz installation fails https://support.bioconductor.org/p/99060/ ## bioc-devel: None. # Other: - Review packages "to move" fr

Re: [Bioc-devel] [Bioconductor/Contributions] DMCHMM (#430)

2017-08-11 Thread Farhad Shokoohi
Hello, Can you update me on the status of reviewing my package DMCHMM? Thank you -- Farhad Shokoohi, Assistant Professor Office address: Department of Mathematics & Statistics Concordia University 1400 de Maisonneuve Blvd. West, Room LB915-1 Office: (514) 848-2424 ext. 4017 Fax: (514) 848-28

Re: [Bioc-devel] Vignette for xcms fails to build on tokay1

2017-08-11 Thread Martin Morgan
On 08/10/2017 04:14 PM, Neumann, Steffen wrote: Hi BioC, since that build error we have updated xcms to 2.99.6, and have started to convert the xcmsDirect vignette to Rmd. Now, we have the same kind of build error on the xcmsMsn vignette, http://bioconductor.org/checkResults/devel/bioc-LATEST/xc

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-11 Thread Turaga, Nitesh
Hi Gosia, The workflow package transition will take place a few weeks after the Software and the Data package transition. Till that point, I suggest you use SVN directly to commit to the server. Sorry for the confusion. Best, Nitesh > On Aug 11, 2017, at 7:10 AM, Malgorzata Nowicka wrote: >

Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-08-11 Thread Malgorzata Nowicka
Hi, All is clear now. I will wait for the transition then. Thank you for all the help. Gosia > On 10 Aug 2017, at 18:52, Turaga, Nitesh > wrote: > > In the meantime, > > You can choose to simply checkout the SVN repo, and commit directly to it. > > Nitesh > > >> On Aug 10, 2017, at 12:

Re: [Bioc-devel] git transition for projects with prior git history

2017-08-11 Thread Turaga, Nitesh
The SVN repo is the most current version of your package as far as Bioconductor goes. Unfortunately, you have totally unrelated histories by the looks of it. (This should show up as an error, when you try to “merge”, i.e `git merge upstream/master`) I would suggest moving forward with the new g