Re: [Bioc-devel] unable to push local changes to bioconductor svn repository

2017-07-19 Thread Shepherd, Lori
You are correct that it is because this is a workflow package and not a software package. The workflow package location is /trunk/madman/workflows/ It should be updated there. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics

[Bioc-devel] unable to push local changes to bioconductor svn repository

2017-07-19 Thread Malgorzata Nowicka
Hello, I have followed Scenario number 2 for my svn mirror for the cytofWorkflow package (more precisely workflow) and I encounter the same problem as described below by Zongli. Below are my exact steps. The same steps worked for my other package DRIMSeq. Could it be because it is a workflow

[Bioc-devel] adding multiple vignettes not all should be processed by the build-system

2017-07-19 Thread Maarten van Iterson
Dear all, I've created a package that contains one vignette showing its core functionality that I would like to be processed by the build-system and two other vignettes showing more comprehensive examples, e.g. including downloading publicly available data from GEO and 1000G vcfs which take too mu