Thank you very much Martin, adding the Makevars did the trick.
> On 21 Jun 2017, at 1:05 pm, Martin Morgan
> wrote:
>
> On 06/20/2017 10:57 PM, Shian Su wrote:
>> Thanks Martin,
>> Should this be as simple as removing all my local htslib files, adding the
>> LinkingTo specifiers and rebuilding
On 06/20/2017 10:57 PM, Shian Su wrote:
Thanks Martin,
Should this be as simple as removing all my local htslib files, adding
the LinkingTo specifiers and rebuilding? Currently getting
Error in dyn.load(dllfile) :
unable to load shared object ‘~/Programs/R/scPipe/src/scPipe.so':
dlopen(
Thanks Martin,
Should this be as simple as removing all my local htslib files, adding the
LinkingTo specifiers and rebuilding? Currently getting
Error in dyn.load(dllfile) :
unable to load shared object ‘~/Programs/R/scPipe/src/scPipe.so':
dlopen(~/Programs/R/scPipe/src/scPipe.so, 6): Symbol
On 06/20/2017 09:38 PM, Shian Su wrote:
My warning is
checking compiled code ... WARNING
File ‘scPipe/libs/scPipe.so’:
Found ‘___stderrp’, possibly from ‘stderr’ (C)
Objects: ‘bgzf.o’, ‘hts.o’, ‘sam.o’
Found ‘_abort’, possibly from ‘abort’ (C)
Object: ‘sam.o’
Found ‘_exit’, po
My warning is
checking compiled code ... WARNING
File ‘scPipe/libs/scPipe.so’:
Found ‘___stderrp’, possibly from ‘stderr’ (C)
Objects: ‘bgzf.o’, ‘hts.o’, ‘sam.o’
Found ‘_abort’, possibly from ‘abort’ (C)
Object: ‘sam.o’
Found ‘_exit’, possibly from ‘exit’ (C)
Object: ‘bgzf.o’
Co
Hi all,
I had this same issue a few months ago (in the weeks leading up to the
release of R-3.4.0), when building an Rmarkdown website on my own laptop.
It seemed the session variables were cleaned up between markdown documents,
but that packages remained loaded and accumulated to the point that I
This is now fixed.
Valerie
On 06/19/2017 03:13 PM, Lucas Schiffer wrote:
> Thanks a ton for looking into it!
>
>> On Jun 19, 2017, at 16:53, Obenchain, Valerie
>> wrote:
>>
>> Hi Lucas,
>>
>> I was out last week and resolving this fell off my radar. Thanks for the
>> prompt.
>>
>> Valerie
>>
Thanks for the report Aaron. I'll take a look.
Valerie
On 06/20/2017 07:10 AM, Aaron Lun wrote:
> Hi all,
>
>
> I'm getting a curious error in the Jenkins log when I try to build the
> singleCellWorkflow:
>
>
> http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/48/label=master/console
Hi Aaron,
you may try to manually run a garbage collection on the DLLs
gcDLLs()
?gcDLLs
Federico
On 20 June 2017 at 15:09, Aaron Lun wrote:
> Hi all,
>
>
> I'm getting a curious error in the Jenkins log when I try to build the
> singleCellWorkflow:
>
>
> http://docbuilder.bioconductor.org:8080
Hi all,
I'm getting a curious error in the Jenkins log when I try to build the
singleCellWorkflow:
http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/48/label=master/console
The key part is at the bottom:
Error: package or namespace load failed for 'GenomicFeatures' in dyn.load(f
Have you looked at the Bioconductor package Rhtslib?
Is your package's source visible on github? If so please provide the URL.
If not, please provide more details on the error messages observed.
It would seem to me that the best way to proceed would be to link to
Rhtslib.
On Tue, Jun 20, 2017
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