[Bioc-devel] What to do about std::cerr/cout warnings in external libraries?

2017-06-19 Thread Shian Su
Hi all, I am using parts of htslib in a new package. R CMD check gives me warnings about R terminating entry points and such resulting from htslib’s calls. Is there a way to get around this or do I have to go into the source code of htslib and change all their calls. Also, Hadley’s best practi

Re: [Bioc-devel] stale data experiment package builds

2017-06-19 Thread Lucas Schiffer
Thanks a ton for looking into it! > On Jun 19, 2017, at 16:53, Obenchain, Valerie > wrote: > > Hi Lucas, > > I was out last week and resolving this fell off my radar. Thanks for the > prompt. > > Valerie > > > > On 06/19/2017 01:26 PM, Lucas Schiffer wrote: >> Hello, >> >> I am wondering

Re: [Bioc-devel] stale data experiment package builds

2017-06-19 Thread Obenchain, Valerie
Hi Lucas, I was out last week and resolving this fell off my radar. Thanks for the prompt. Valerie On 06/19/2017 01:26 PM, Lucas Schiffer wrote: > Hello, > > I am wondering if this issue is ongoing – I have been watching the > curatedMetagenomicData package for the last few days and do not se

Re: [Bioc-devel] stale data experiment package builds

2017-06-19 Thread Lucas Schiffer
Hello, I am wondering if this issue is ongoing – I have been watching the curatedMetagenomicData package for the last few days and do not see any build activity. Will the single package builder run tonight? Thanks, Lucas > On Jun 13, 2017, at 09:17, Obenchain, Valerie > wrote: > > Hi, > >