Re: [Bioc-devel] question regarding timeout

2017-06-08 Thread Obenchain, Valerie
Hi, I'm not sure what's going on here. It looks there haven't been any changes to the vignette and the package doesn't have the timeout in devel. I went on the release builder and was able to build the vignette which confirms that the vignette doesn't hang, it just takes a long time. When I ran

[Bioc-devel] question regarding timeout

2017-06-08 Thread Krithika Bhuvaneshwar
Hello, We are the maintainers of the CINdex package. I believe when the upgrade to the new Bioconductor version happened, the package times out in Windows environment during build. https://bioconductor.org/packages/release/bioc/html/CINdex.html Could you please let us know if we need to do anyt

Re: [Bioc-devel] Changing name of submitted package

2017-06-08 Thread Martin Morgan
On 06/08/2017 04:55 AM, sergi.pic...@upc.edu wrote: Hello Martin, The package was called "diffusion" and has been renamed to "diffuStats" (issue 387) change of package / repo name requires manual intervention; I did this and triggered a new build. Provided your web hook is ok then subsequent

Re: [Bioc-devel] Changing name of submitted package

2017-06-08 Thread sergi . picart
Hello Martin,  The package was called "diffusion" and has been renamed to "diffuStats" (issue 387) Quoting Martin Morgan : > On 06/08/2017 04:04 AM, sergi.pic...@upc.edu wrote: >> Hello everyone, >> >> I have submitted a package and been asked to change the package name. > > I wonder what pa

Re: [Bioc-devel] Monocle version from biocLite is not the newest version

2017-06-08 Thread Martin Morgan
On 06/07/2017 11:03 PM, Xiaojie Qiu wrote: Dear Bioconductor maintainers, We recently received installation issue reports regarding our Monocle package from bioconductor. When they use the following code to install the package, source("https://bioconductor.org/biocLite.R";) biocLite("monocle")

[Bioc-devel] Monocle version from biocLite is not the newest version

2017-06-08 Thread Xiaojie Qiu
Dear Bioconductor maintainers, We recently received installation issue reports regarding our Monocle package from bioconductor. When they use the following code to install the package, source("https://bioconductor.org/biocLite.R";) biocLite("monocle") They only install the 2.2 version instead of

Re: [Bioc-devel] Changing name of submitted package

2017-06-08 Thread Martin Morgan
On 06/08/2017 04:04 AM, sergi.pic...@upc.edu wrote: Hello everyone, I have submitted a package and been asked to change the package name. I wonder what package this is? Martin I have renamed the package, the git repository, updated the url and the thread title as well. However, bioc-issue

[Bioc-devel] Changing name of submitted package

2017-06-08 Thread sergi . picart
Hello everyone,  I have submitted a package and been asked to change the package name.   I have renamed the package, the git repository, updated the url and the thread title as well. However, bioc-issue-bot does not seem to react to pushes anymore. If I switch to the old git repo name, it do