Re: [Bioc-devel] BubbleTree devel is not updating

2017-02-23 Thread Martin Morgan
On 02/23/2017 03:19 PM, Creasy, Todd wrote: Hi, I�ve been updating the svn repo with changes to BubbleTree (https://www.bioconductor.org/packages/devel/bioc/html/BubbleTree.html) but it doesn�t seem like the nightly builds are picking up the changes. I�ve changed the version in the description t

[Bioc-devel] Question about using R-devel

2017-02-23 Thread Aimin Yan
When I used R-devel to perform R CMD build on my package, I got the following errors. Actually, I put ^packrat/ in PathwaySplice/.Rbuildignore. Does anyone has idea on this error? Thank you, Aimin cp: PathwaySplice/packrat/lib-R/boot: No such file or directory cp: PathwaySplice/packrat/lib-R/

[Bioc-devel] BubbleTree devel is not updating

2017-02-23 Thread Creasy, Todd
Hi, I�ve been updating the svn repo with changes to BubbleTree (https://www.bioconductor.org/packages/devel/bioc/html/BubbleTree.html) but it doesn�t seem like the nightly builds are picking up the changes. I�ve changed the version in the description to 2.5.3. Is there a reason it might not be

Re: [Bioc-devel] covr

2017-02-23 Thread Estefania Mancini
Thanks Herve! I will try to include test code in the next version of the package. By the way, I am a little lost with changes in the package. I want to modify the code of the accepted package and I want to add people to my project in GitHub so I think is better for us continuing using it rep

[Bioc-devel] Mac devel builds: oaxaca update

2017-02-23 Thread Obenchain, Valerie
Hi, oaxaca has been in and out of the build report the past couple of days because it was not completing on time. The machine has been rebooted and should be back in today's report (Feb 23). Transitioning to toluca2 as the primary Mac devel builder is a priority for us over the next couple of week