[Bioc-devel] Changes S4Vectors etc.

2017-02-08 Thread Leonard Goldstein
Hi Hervé, It looks like there have been some changes in bioc-devel (S4Vectors etc.) that break the SGSeq package (see below). I'm not sure whether this is something that needs to be addressed in SGSeq or its dependencies. I'd be grateful for any pointers. Thanks for your help. Leonard -- > examp

[Bioc-devel] makeTxDbPackage bugs in Bioconductor 3.5

2017-02-08 Thread Keith Hughitt
Greetings, I came across a couple issues when working with the most recent version of GenomicFeatures (Bioconductor 3.5/Github). 1) The "Resource URL" metadata field is only set via some of the helper functions (e.g. makeTxDbFromBiomart), but not others. Since it is required by makeTxDbPackage, t

Re: [Bioc-devel] forgot username password

2017-02-08 Thread M.van_Iterson
Thanks Martin, this solved the issue. Cheers, Maarten From: Martin Morgan [martin.mor...@roswellpark.org] Sent: Tuesday, February 7, 2017 9:22 PM To: Iterson, M. van (MOLEPI); bioc-devel@r-project.org Subject: Re: [Bioc-devel] forgot username password On