Thank you for the clarification.
I'll look into replacing BLAT with SHRiMP2, which is under a permissive
FOSS license. SHRiMP2 has comparable or superior performance across
different data types in multiple independent studies anyway. I just
wished I had not wasted three weeks scrubbing and ref
Thanks for the report. It looks like the directory structure has
changed. I'll work on this tomorrow and will post back when it's fixed.
Valerie
On 01/25/2017 06:29 PM, Raymond Cavalcante wrote:
> Hello,
>
> I'm suddenly encountering errors with GenomeInfoDb::Seqinfo():
>
>>> GenomeInfoDb::Seqin
Hello,
I'm suddenly encountering errors with GenomeInfoDb::Seqinfo():
> > GenomeInfoDb::Seqinfo(genome='hg19')
> Error in file(file, "rt") : cannot open connection
> In addition: Warning message:
> In file(file, "rt") :
> URL
> 'https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000
On 01/25/2017 08:12 PM, Dan Tenenbaum wrote:
I can't speak to the license question (I'd guess the answer is no) but I am
pretty sure that any dependencies of a Bioconductor package have to be
available on CRAN or in Bioconductor itself. So you can't depend on packages
that are only in GitHub.
I can't speak to the license question (I'd guess the answer is no) but I am
pretty sure that any dependencies of a Bioconductor package have to be
available on CRAN or in Bioconductor itself. So you can't depend on packages
that are only in GitHub.
Dan
- Original Message -
> From: "Da
Hello,
I'd like to ask whether Bioconductor will allow a dependency package
under a non-commercial license:
https://github.com/djhshih/mlat/blob/master/LICENSE_blat.txt
I read the package guidelines:
http://bioconductor.org/developers/package-guidelines/#license but it
does not address thi
