Re: [Bioc-devel] lumi package is not available

2016-11-10 Thread Gang Feng
Hi, Jim Both Dr. Lei Huang and I will help Pan maintain lumi, and figure out the problems (We partially fixed the issue ). If we found the similar issues in Pan's other packages, we will correct them, too. Thanks Gilbert From: "James W. MacDonald" mailto:jmac...@uw.edu>> Reply-To: "jmac...@u.

Re: [Bioc-devel] Subversion Log Stalled

2016-11-10 Thread Martin Morgan
Thanks, should be back on target now. Martin On 11/10/2016 06:00 PM, Dario Strbenac wrote: Good day, The log at http://bioconductor.org/developers/svnlog/ stopped updating two weeks ago. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

Re: [Bioc-devel] can't fix the bug: Error: 'devel' version requires a more recent R

2016-11-10 Thread Martin Morgan
On 11/10/2016 06:15 PM, Jurat Shayidin wrote: BiocDevel: I aware that this question raised in the mailing list weeks ago, and I followed the thread to possibly fix the problem, but I still can't able to use devel branch after I installed Bioc 3.4. I tried to remove BiocInstaller from the the dir

[Bioc-devel] can't fix the bug: Error: 'devel' version requires a more recent R

2016-11-10 Thread Jurat Shayidin
BiocDevel: I aware that this question raised in the mailing list weeks ago, and I followed the thread to possibly fix the problem, but I still can't able to use devel branch after I installed Bioc 3.4. I tried to remove BiocInstaller from the the directory and try the solution from same thread, pr

[Bioc-devel] Subversion Log Stalled

2016-11-10 Thread Dario Strbenac
Good day, The log at http://bioconductor.org/developers/svnlog/ stopped updating two weeks ago. -- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia ___ Bioc-devel@r-project.org mailing list https://

Re: [Bioc-devel] A handful of check to follow up on R CMD BiocCheck

2016-11-10 Thread Martin Morgan
On 11/10/2016 05:36 AM, Kevin RUE wrote: Hi Martin, Thanks for spending the time and effort to refactor and integrate my code into BiocCheck. I didn't intend to give you so much to think about ! For the record, I used the "checkFunctionLengths" method (now starting at line 829 of checks.R) as a

Re: [Bioc-devel] A handful of check to follow up on R CMD BiocCheck

2016-11-10 Thread Kevin RUE
Hi Martin, Thanks for spending the time and effort to refactor and integrate my code into BiocCheck. I didn't intend to give you so much to think about ! For the record, I used the "checkFunctionLengths" method (now starting at line 829 of checks.R) as a template to offer code somewhat homogenous