Re: [Bioc-devel] Error with InteractionSet package

2016-11-08 Thread Aaron Lun
The randomness of the errors is concerning, especially given that none of these functions should be calling compiled code yet. Can you produce a minimal working example that reproducibly triggers at least one of the errors? And post your session information. -Aaron On 08/11/16 17:34, Ioannis

Re: [Bioc-devel] download stats

2016-11-08 Thread Kasper Daniel Hansen
This is a bit embarrassing. Somehow I was convinced it was December. All looks fine.("... you have gained a level in Distracted Professorship"). Kasper On Tue, Nov 8, 2016 at 11:50 AM, Hervé Pagès wrote: > Hi Kasper, > > The download stats just got updated: > > http://bioconductor.org/packa

[Bioc-devel] Error with InteractionSet package

2016-11-08 Thread Ioannis Vardaxis
Hi, I am trying to combine two GRanges from two anchors of same length in to a Gitnteractions object and I get the following error: > PairedData=InteractionSet::GInteractions(anchor1=Anchor1,anchor2=Anchor2) Error in .new_GInteractions(anchor1 = anchor1, anchor2 = anchor2, regions = regions, :

Re: [Bioc-devel] download stats

2016-11-08 Thread Hervé Pagès
Hi Kasper, The download stats just got updated: http://bioconductor.org/packages/stats/ They are updated twice a week, on Tuesday and Friday between 8 and 9 AM PST. Note that because of how the download log files are generated and propagated to the machine where the stats are computed, and be

Re: [Bioc-devel] download stats

2016-11-08 Thread Kasper Daniel Hansen
It was pointed out to me that the (sub) heading on the page tells me that the script for counting downloads was last run Nov 4th, explaining the discrepancy. On Tue, Nov 8, 2016 at 9:24 AM, Kasper Daniel Hansen < kasperdanielhan...@gmail.com> wrote: > Is there something wrong with the download st

Re: [Bioc-devel] Availability shield URLs

2016-11-08 Thread Leonardo Collado Torres
Awesome, thanks Dan! On Tue, Nov 8, 2016 at 9:40 AM, Martin Morgan wrote: > On 11/02/2016 11:54 AM, Leonardo Collado Torres wrote: > >> Hi, >> >> I'm just curious why >> http://www.bioconductor.org/shields/availability/release/derfinder.svg >> works but http://www.bioconductor.org/shields/availa

Re: [Bioc-devel] Availability shield URLs

2016-11-08 Thread Martin Morgan
On 11/02/2016 11:54 AM, Leonardo Collado Torres wrote: Hi, I'm just curious why http://www.bioconductor.org/shields/availability/release/derfinder.svg works but http://www.bioconductor.org/shields/availability/release/recount.svg doesn't (http://www.bioconductor.org/shields/availability/3.4/reco

[Bioc-devel] download stats

2016-11-08 Thread Kasper Daniel Hansen
Is there something wrong with the download stats in November. All the packages I look at have lost about 85-90% compared to other months of the year: http://bioconductor.org/packages/stats/bioc/GenomicRanges/ Best, Kasper [[alternative HTML version deleted]] __

Re: [Bioc-devel] Question about sumbition process and biocviews

2016-11-08 Thread Ioannis Vardaxis
Create a folder \inst and place the REFERENCES.bib in it. (see attached) Then in the R function add: #’ @references \insertRef{ENCODE_1}{PkgA}. You have to have the Rdpack installed. -- Ioannis Vardaxis Stipendiat IMF NTNU On 07/11/16 13:49, "Ioannis Vardaxis" wrote: > > > > > >On 07/11/1

Re: [Bioc-devel] Question about sumbition process and biocviews

2016-11-08 Thread Martin Morgan
On 11/08/2016 08:26 AM, Ioannis Vardaxis wrote: Create a folder \inst and place the REFERENCES.bib in it. (see attached) Then in the R function add: #’ @references \insertRef{ENCODE_1}{PkgA}. You have to have the Rdpack installed. when I do that (see https://github.com/mtmorgan/PkgA/tree/pars