Re: [Bioc-devel] Bug in setdiff() for signature 'IRangesList, IRangesList'?

2016-11-07 Thread Leonard Goldstein
Thanks Michael! Leonard On Mon, Nov 7, 2016 at 11:35 AM, Michael Lawrence wrote: > I fixed this in 2.9.6 and 2.8.1. > > It brings to light an interesting pecularity of the recycling rule. > > Thanks, > Michael > > On Mon, Nov 7, 2016 at 9:46 AM, Leonard Goldstein > wrote: > > Dear Hervé et a

Re: [Bioc-devel] Bug in setdiff() for signature 'IRangesList, IRangesList'?

2016-11-07 Thread Michael Lawrence
I fixed this in 2.9.6 and 2.8.1. It brings to light an interesting pecularity of the recycling rule. Thanks, Michael On Mon, Nov 7, 2016 at 9:46 AM, Leonard Goldstein wrote: > Dear Hervé et al. > > I noticed that setdiff(x, y) where 'x' is an IRangesList containing an > empty IRanges results in

[Bioc-devel] Bug in setdiff() for signature 'IRangesList, IRangesList'?

2016-11-07 Thread Leonard Goldstein
Dear Hervé et al. I noticed that setdiff(x, y) where 'x' is an IRangesList containing an empty IRanges results in an error (see below). I would have expected the function to return the IRangesList with an empty IRanges? Many thanks for your help. Leonard -- > x <- IRangesList(IRanges()) > y <-

Re: [Bioc-devel] Question about sumbition process and biocviews

2016-11-07 Thread Martin Morgan
On 11/07/2016 07:35 AM, Ioannis Vardaxis wrote: Ok, Consider an R.script with a function and roxygen entries above the function out the author etc. One of the entries there is the following: #' @references \insertRef{key}{pkg}. This macro is given by the Rdpack R package for using references in

Re: [Bioc-devel] Question about sumbition process and biocviews

2016-11-07 Thread Ioannis Vardaxis
Ok, Consider an R.script with a function and roxygen entries above the function out the author etc. One of the entries there is the following: #' @references \insertRef{key}{pkg}. This macro is given by the Rdpack R package for using references in the help pages. Where I have created a REFERENCES.

Re: [Bioc-devel] Question about sumbition process and biocviews

2016-11-07 Thread Martin Morgan
On 11/07/2016 05:26 AM, Ioannis Vardaxis wrote: Hi, I was Rechecking the package folder and not the built version. Now it works, thanks. The warning I get for the references is the following: Warning in parse_Rd(manpage) : /var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw4gn/T//RtmpNOtV3V/MACPET/m

Re: [Bioc-devel] Question about sumbition process and biocviews

2016-11-07 Thread Ioannis Vardaxis
Hi, I was Rechecking the package folder and not the built version. Now it works, thanks. The warning I get for the references is the following: Warning in parse_Rd(manpage) : /var/folders/6n/6y8cjthx4sb0hk5k5w8q3lw4gn/T//RtmpNOtV3V/MACPET/man/sum mary.Rd:78: unknown macro '\insertRef'