Re: [Bioc-devel] Question about a package submission

On 10/28/2016 10:08 AM, Kevin RUE wrote: Seems to be a MS Windows thing indeed. I have installed R-devel from scratch on a Window machine, then a fresh installation of BioC (biocLite()), then installed my package, and I get the error: c(GRanges(), GRanges()) Error in c(GRanges(), GRanges()) :

Re: [Bioc-devel] Question about a package submission

Seems to be a MS Windows thing indeed. I have installed R-devel from scratch on a Window machine, then a fresh installation of BioC (biocLite()), then installed my package, and I get the error: > c(GRanges(), GRanges()) Error in c(GRanges(), GRanges()) : could not find symbol "recursive" in envi

Re: [Bioc-devel] Question about a package submission

(What puzzles me most is that it builds fine on Travis CI , just not on AppVeyor ). MS Windows issue? Best, Kevin On Fri, Oct 28, 2016 at 12:30 PM, Kevin RUE wrote: > Thanks for sharing your solution Ioannis.

Re: [Bioc-devel] Question about a package submission

Thanks for sharing your solution Ioannis. Unfortunately, it did not solve my situation on AppVeyor: https://ci.appveyor.com/project/kevinrue/tvtb/build/1.0.29 I'll keep trying a few more things. Best Kevin On Fri, Oct 28, 2016 at 12:13 PM, Ioannis Vardaxis < ioannis.varda...@math.ntnu.no> wrote:

Re: [Bioc-devel] Question about a package submission

For me, running biocLite(c("rtracklayer", "S4Vectors", "XVector", "IRanges", "Biostrings", "GenomicRanges", "GenomicAlignments")) Worked and solved the error. Ioannis -- Ioannis Vardaxis Stipendiat IMF NTNU From: Kevin RUE mailto:kevinru...@gmail.com>> Date: Friday 28 October 2016 at 12:38

Re: [Bioc-devel] lumi package is not available

Hi, We are working on one issue in the lumi package. Sorry about this. Gilbert On 10/28/16 3:20 AM, "Bioc-devel on behalf of 王棣台" wrote: >Hi, all > >I am the author of package "anamiR". >I got a Warning message "Warning: dependency ''lumi" is not available" >when I installed anamiR. >Also, I

Re: [Bioc-devel] Question about a package submission

Dear Martin, Sorry for slightly diverting the thread solely based on the error message: > Error in .Primitive("c")(, "Rle">) : > could not find symbol "recursive" in environment of the generic function > I can somewhat picture the issue from your explanation. > I think that the generic was r

Re: [Bioc-devel] lumi package is not available

Dear T.Wang. First of all, as a general rule, please include the sessionInfo() output and command that caused the error to facilitate useful replies. Here I will assume that you are using the devel branch of BioC on the latest R/BioC setup available. As far as I know, your problem is still a cons

[Bioc-devel] lumi package is not available

Hi, all I am the author of package "anamiR". I got a Warning message "Warning: dependency ''lumi" is not available" when I installed anamiR. Also, I tried other packages which depend on "lumi" package, and all got the same warning message. Is there any way I can solve this problem? Best regards