Re: [Bioc-devel] Does Bioconductor update my DESCRIPTION automatically?

2016-09-14 Thread Obenchain, Valerie
You need to bump the 'z' of the x.y.z version when you check in (svn log shows no version bump). This increment is a trigger for the package to be (re)built and propagated to the landing page. Currently the builds run Saturday, Monday and Wednesday at 7:15 pm PST. Reports are generated about 32 ho

[Bioc-devel] Does Bioconductor update my DESCRIPTION automatically?

2016-09-14 Thread Ted Wong
Dear all, I've updated my license and description for my package in DESCRIPTION. My institution wants that to show in the Bioconductor Package online page: https://bioconductor.org/packages/devel/bioc/html/Anaquin.html Does Bioconductor automatically update the page? Do I need to contact Martin

Re: [Bioc-devel] Missing vignette on my BioConductor page

2016-09-14 Thread Martin Morgan
On 09/14/2016 08:49 AM, Marine Rohmer wrote: Hi Martin, thank you so much for you answer! I'm not sure to have well understood what is my problem, maybe I missed somewhere some basic learning about how to package. According to "The vignette" section from "Bioconductor: Package guidelines" and p

Re: [Bioc-devel] Why sleuth is not in Bioconductor?

2016-09-14 Thread Dario Strbenac
Hello, That contradicts the instructions on the sleuth Download page. It contains the R commands biocLite("rhdf5") and devtools::install_github("pachterlab/sleuth") You may have read the instructions too quickly and mixed the arguments up. Bioconductor requires lots of function documentation w

Re: [Bioc-devel] Why sleuth is not in Bioconductor?

2016-09-14 Thread Martin Morgan
On 09/14/2016 06:54 AM, Ted Wong wrote: Thanks Vincent, I tried to install it with Bioconductor (described on their Github) before starting the question, but it was broken (at least for me). The command I tried was: biocLite("pachterlab/sleuth") This is not a question about package developm

Re: [Bioc-devel] Why sleuth is not in Bioconductor?

2016-09-14 Thread Ted Wong
Thanks Vincent, I tried to install it with Bioconductor (described on their Github) before starting the question, but it was broken (at least for me). The command I tried was: biocLite("pachterlab/sleuth") I'll try to install directly from Github. On Wed, Sep 14, 2016 at 8:37 PM, Vincen

Re: [Bioc-devel] Why sleuth is not in Bioconductor?

2016-09-14 Thread Vincent Carey
http://pachterlab.github.io/sleuth/download On Wed, Sep 14, 2016 at 6:20 AM, Ted Wong wrote: > Dear all, > > I thought Sleuth (https://github.com/pachterlab/sleuth) is part of the > Bioconductor. But I'm not able to find it anywhere. > > What's the status of the package? > > > NOTICE > Please

[Bioc-devel] Why sleuth is not in Bioconductor?

2016-09-14 Thread Ted Wong
Dear all, I thought Sleuth (https://github.com/pachterlab/sleuth) is part of the Bioconductor. But I'm not able to find it anywhere. What's the status of the package? NOTICE Please consider the environment before printing this email. This message and any attachments are intended for the addre