Actually it looks like it was a permissions issue with the directory
/tmp/udcCache. I removed this directory (as superuser) and that error no longer
happens.
Now I get a different error which seems unrelated:
...
* creating vignettes ... ERROR
Quitting from lines 2-32 (SRP009615-results.Rmd)
Er
1.33.11 is the latest version in svn.
https://www.bioconductor.org/checkResults/3.4/bioc-LATEST/zin1-R-instpkgs.html
will tell you (with a reasonable degree of accuracy) which version of which
package is installed on zin1, it reports that it has version 1.33.11 installed.
The issue with recount
Hi,
Currently the build for `recount` is failing in the Linux build
machine
http://www.bioconductor.org/checkResults/3.4/bioc-LATEST/recount/zin1-buildsrc.html.
It's been failing with the same error message for a while. The build
message ends with:
Setting options('download.file.method.GEOquery'
On 8 August 2016 21:29, Gabe Becker wrote:
> Alex (et al),
>
> Yihui is currently working towards a CRAN release for a modern version of
> DT, so sometime "soon" (I have no insight into what definition of soon is
> in use here) things should work in your particular case.
Soon actually means n
Hi Etienne,
The BiocInstaller package, which contains the biocLite() function, looks
in different Bioconductor repositories depending on what version of R is
being run. BiocInstaller 1.20.* (your code below) was looking in the
previous release repository (Bioconductor 3.1 and R 3.2) where the
bios
Dear Etienne,
Bioconductor versions are linked to R versions. As the biosigner package
is a recent addition to Bioconductor (Bioc version 3.3), it will require
a recent R version, i.e. the R version that was current when Bioc 3.3
was released. That is how things are, guaranteeing a coherent set o
Dear Bioc team,
A friend of mine had the following trouble to install the biosigner package on
R 3.2.3.
I do not understand why the package would require a dedicated version of R (in
particular >3.2.3) except that it uses S4 methods, and if/how I have to specify
an R version within the package
Hi,
destiny ’s git mirror has been out of sync for quite some time.
The currently latest SVN revision has bumped the version to 1.3.4 , but git
master is still on 1.3.0 .
Thanks for looking at it,
Philipp
Helmholtz Zentrum Muenchen
Deutsches Forschungszentrum fuer Gesundheit und Umwe
